Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13d02
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 31 0.13
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 31 0.23
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 27 2.9
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch... 27 2.9
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 26 5.0
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.0
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas... 26 6.7
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 26 6.7
SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces... 25 8.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 8.8
>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 31.5 bits (68), Expect = 0.13
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = -2
Query: 579 ERFERSVSSASCHVREEGTIPWSGHAFSTSGPARHKIEHRNVFQSLPENSSRYPECCSE* 400
+R S++SA + G + S FS+SG +++ + +P NSSR ++
Sbjct: 5 QRANDSMNSAKQYSSSAGAVHNSDEPFSSSGAPQNRNFDTSYTSEIPSNSSR---AANDM 61
Query: 399 GRGYGEGPPAQAVSGD 352
G G G P ++ D
Sbjct: 62 GTDIGSGDPYAGMTSD 77
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 30.7 bits (66), Expect = 0.23
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 621 LKENTQFRRHQVHFERFERSVSSASCHVREE 529
L++ F R H ERFER +S + HV+ E
Sbjct: 18 LRQCEDFHRLSTHIERFEREQASLNMHVKTE 48
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 298 SIPAFITGTHGPSLVNDSIARHSLCWRALAVSTSLF 405
+IPA++ T+G S V A+ SL ++ STS F
Sbjct: 207 TIPAYVEATNGSSTVRSPHAKRSLSSISVKSSTSPF 242
>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 27.1 bits (57), Expect = 2.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 467 SILCRAGPLVLKACPLQGIVPSSRTWHEAL 556
+++CR P+V PL VP +TW EAL
Sbjct: 337 TLVCRRLPVVFSVKPL---VPDIKTWKEAL 363
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 273 PNSDSGHDFHSGLHNGHPRTFL 338
P SD HDFH L++ PR L
Sbjct: 382 PPSDYKHDFHFQLYSSLPRALL 403
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -1
Query: 649 LTCLPSSRRPQRKYPISQASSSLRTI*AKRLKCFVPCPRRRHYSLERTR 503
L+ L +S QRK S S++ + + +K+L+ +P P H + R +
Sbjct: 146 LSLLSTSSLQQRKITPSNLSNTSKPMDSKQLERLIPVPHGHHLTRLRKK 194
>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +2
Query: 650 SQPESCWECGNIAQAISVPRRL 715
S P C+ CGN+A + V L
Sbjct: 256 SAPNYCYRCGNVASVMKVDESL 277
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = -2
Query: 627 GGLKENTQFRRHQVHFERFERSVSSASCHVREEGTIPWSGHAFSTSGPARHKIEHRNVFQ 448
G +E+ Q +V E+ V SAS + S ST ++H HR++FQ
Sbjct: 94 GNPQESKQEPNLEVQQTEKEKDVDSASAENESINSSSSSSKECSTQTQSKHYNLHRDIFQ 153
>SPCC1739.10 |mug33||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 336
Score = 25.4 bits (53), Expect = 8.8
Identities = 21/70 (30%), Positives = 27/70 (38%)
Frame = -2
Query: 624 GLKENTQFRRHQVHFERFERSVSSASCHVREEGTIPWSGHAFSTSGPARHKIEHRNVFQS 445
GLK + + F RS+SS + VRE +P S F R +
Sbjct: 237 GLKRGGSVSKLKPTFSNDSRSLSSYAPTVREPVPVPKSNSGF------RFPFMRNKPAEQ 290
Query: 444 LPENSSRYPE 415
PEN R PE
Sbjct: 291 APENPFRDPE 300
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 546 TKHLRRFAQIVRSELDACEIGYFL 617
TK L R Q++ ELD CE G L
Sbjct: 503 TKDLARQVQVLLHELDLCENGIVL 526
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,256,457
Number of Sequences: 5004
Number of extensions: 69597
Number of successful extensions: 171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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