Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13d02
(757 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0076 + 20710482-20710670,20711313-20711547,20711664-207116... 32 0.57
08_02_0326 - 15810065-15810315,15811653-15811787,15812466-158125... 32 0.57
02_02_0706 + 13126176-13126644,13128666-13128867,13129424-131295... 31 0.75
02_05_0626 - 30456714-30456829,30456951-30457023,30457136-304572... 31 0.99
06_01_1092 + 8966584-8967053,8967737-8967854,8968030-8968253,896... 29 3.0
02_04_0448 - 23001579-23001683,23001783-23002382,23002479-230026... 29 3.0
07_03_1345 + 25919379-25920866,25921342-25921962,25922733-259228... 29 4.0
01_06_1630 + 38753016-38753209,38753904-38754039,38754291-387544... 29 4.0
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 29 4.0
06_03_1157 - 28074675-28074710,28075318-28075514,28075676-280758... 28 7.0
03_01_0136 + 1069136-1069292,1070783-1071060,1071246-1071602,107... 28 7.0
05_03_0013 + 7362056-7362471,7363235-7364081,7364272-7364758,736... 28 9.2
>09_06_0076 +
20710482-20710670,20711313-20711547,20711664-20711689,
20712000-20712293,20712603-20712728,20712827-20712896,
20712992-20713182,20713394-20713519,20713878-20714279,
20714364-20714758,20714861-20715315,20715403-20715524,
20715653-20715693,20716026-20716129,20716363-20716576,
20717667-20717780,20718576-20718612
Length = 1046
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -3
Query: 404 NKDVDTARALQHKLCLAIESLTKEGPWVPVMKAGMEIVTGIRV 276
N + D A L+ K+C A+E + PW+P+ +E G+RV
Sbjct: 865 NLEKDMADDLRKKVCDALEKECADKPWMPITVFVVEKTGGLRV 907
>08_02_0326 -
15810065-15810315,15811653-15811787,15812466-15812564,
15813334-15813352
Length = 167
Score = 31.9 bits (69), Expect = 0.57
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -2
Query: 594 HQVHFERFERSVSSASCHVREEGTIPWSGHAFSTSGPARHKIEHRNVFQSLPE 436
+ +H E+ VS C +R+E T ++ +F+ PA + H+N QSL E
Sbjct: 39 NDLHIEKRTCYVSLTFC-MRDETTTTYTSTSFTGDRPAPEDLRHKNSHQSLKE 90
>02_02_0706 +
13126176-13126644,13128666-13128867,13129424-13129501,
13131295-13131466
Length = 306
Score = 31.5 bits (68), Expect = 0.75
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 332 LPWLMIRSPDTACAGGPSPYPRP 400
+P L++ SP TA A GP+P P P
Sbjct: 1 MPLLLLLSPPTAAAAGPAPAPAP 23
>02_05_0626 -
30456714-30456829,30456951-30457023,30457136-30457250,
30457368-30457450,30457532-30457685,30457859-30458095,
30458212-30458435,30458657-30458774,30459286-30459614
Length = 482
Score = 31.1 bits (67), Expect = 0.99
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 326 TDLPWLMIRSPDTACAGGPSPYPRPYSEQ 412
+DL W+ +P T CA GP P +P E+
Sbjct: 133 SDLTWIQCDAPCTNCAKGPHPLYKPAKEK 161
>06_01_1092 +
8966584-8967053,8967737-8967854,8968030-8968253,
8968352-8968588,8969122-8969275,8969356-8969438,
8969573-8969687,8969837-8969909,8970005-8970147
Length = 538
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 326 TDLPWLMIRSPDTACAGGPSPYPRP 400
+DL W+ +P T CA GP P +P
Sbjct: 180 SDLTWIQCDAPCTNCAKGPHPLYKP 204
>02_04_0448 -
23001579-23001683,23001783-23002382,23002479-23002628,
23002788-23003015,23003188-23003302,23003392-23004659,
23006621-23006692
Length = 845
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 575 DLSEASQVLRAMSEKKALFLGADTLLAPA-ALLGIKSSIGTSFNLFPKIAHAILS 414
D S SQ L + K + G TL A A G+KSS G +L+P I + S
Sbjct: 224 DTSLGSQPLDTQNSKSSGARGLKTLSVEAPATSGVKSSQGQQASLYPSIEELLFS 278
>07_03_1345 +
25919379-25920866,25921342-25921962,25922733-25922893,
25923284-25923422,25923509-25923592,25923944-25923982,
25924037-25924222,25924347-25924478,25924810-25925009,
25925294-25925498,25925618-25925944
Length = 1193
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 467 SILCRAGPLVLKACPLQGIVP 529
S +C+A PLVL CP G P
Sbjct: 402 SCMCKAAPLVLTECPFSGPYP 422
>01_06_1630 +
38753016-38753209,38753904-38754039,38754291-38754404,
38755053-38755112,38755223-38755252,38755523-38756206
Length = 405
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 497 APAALLGIKSSIGTSFNLFPKIAHAILSAVQNKDVDTA 384
APAA +G+ S FP ++ A + +D+DTA
Sbjct: 132 APAAFVGLFSGKNVGKQAFPSVSLASMETAPTEDLDTA 169
>01_06_0595 -
30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 29.1 bits (62), Expect = 4.0
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Frame = -3
Query: 572 LSEASQVLRAMSEKKALFLGADTLLAPAALLGIKSSIGTSFNLFPKIAHAILS-AVQNKD 396
LSEA + LR ++K A LAP + SS TS N H +L+ + ++D
Sbjct: 673 LSEAEKQLRVSNDKTTWLTAALLQLAPDKQYVLPSSSSTSLN------HGVLAGSFPDRD 726
Query: 395 VDTARALQHKLCLAIESLTKEGP 327
+ AL+H +A S + P
Sbjct: 727 MAIHSALEHNGNMASTSYRERRP 749
>06_03_1157 -
28074675-28074710,28075318-28075514,28075676-28075875,
28076190-28076287,28076798-28076854,28076952-28077010,
28077705-28077738,28077840-28077890
Length = 243
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -3
Query: 656 VEINMPAFVTEASKKIPNFAGIKFTSNDLSEASQVLRAMSEKKALFLGADTL 501
+E+ + + EASK A ++ ND EA + +A E+ A L +DTL
Sbjct: 66 LEVILNGKINEASKLSSRIADLESQLNDEKEACERSQARFERFADLLASDTL 117
>03_01_0136 +
1069136-1069292,1070783-1071060,1071246-1071602,
1071706-1072119,1072221-1072302,1072429-1073093
Length = 650
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 680 YHIPSMTRVEI-NMPAFVTEASKKIPNFAGIKFTSNDLSE 564
+H + +VEI +M F E K++ N G+K +NDL E
Sbjct: 364 HHESARLQVEIADMEVFKDE-KKRVENLRGVKLVNNDLGE 402
>05_03_0013 +
7362056-7362471,7363235-7364081,7364272-7364758,
7365062-7365126,7365275-7365643
Length = 727
Score = 27.9 bits (59), Expect = 9.2
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Frame = -2
Query: 618 KENTQFRRHQVHFERFERSVSSASCHVRE---EGTIPWSGHAFSTSGPARHKIEHRNVFQ 448
K+NTQF + +V + + SS+S E +G SG S + EH +
Sbjct: 133 KQNTQFGKRKVFQKHIPKEASSSSSENGENSSDGESDSSGEC-SDDSDSSESSEHAHSAP 191
Query: 447 SLPENSSR 424
S+ E SSR
Sbjct: 192 SVQETSSR 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,721,430
Number of Sequences: 37544
Number of extensions: 494193
Number of successful extensions: 1357
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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