Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13d02
         (757 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    28   6.2  

>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
           protein F32A5.2a protein.
          Length = 1000

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/80 (28%), Positives = 31/80 (38%)
 Frame = +1

Query: 277 TLIPVTISIPAFITGTHGPSLVNDSIARHSLCWRALAVSTSLF*TALRIA*AIFGKRLKD 456
           T+IP T  IP  +T T   +    S    +        ST+   T   IA          
Sbjct: 187 TVIPTTTRIPTTVTTTTETTTTPQSTTTTTTVPPTTTTSTT---TTTTIATTTTSTSPAP 243

Query: 457 VPMLDFMPSRAAGAKSVSAP 516
           VP+  F+PS + GA   S P
Sbjct: 244 VPVQQFVPSFSDGASDASGP 263


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/78 (28%), Positives = 31/78 (39%)
 Frame = -3

Query: 668  SMTRVEINMPAFVTEASKKIPNFAGIKFTSNDLSEASQVLRAMSEKKALFLGADTLLAPA 489
            S +  + N  A    A+  +   A     S   ++A  V +     +AL   +    A A
Sbjct: 2391 SQSSAQANQAAQAQAAAVALAQVAAAASASTSSADAQAVAQQQQVLEALLAMSMNPAALA 2450

Query: 488  ALLGIKSSIGTSFNLFPK 435
            AL G  SS GTS    PK
Sbjct: 2451 ALTGTSSSTGTSTPSAPK 2468


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,073,227
Number of Sequences: 27780
Number of extensions: 401839
Number of successful extensions: 1087
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)