Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13d02
         (757 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    26   0.44 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.3  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.4  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   9.4  

>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +2

Query: 335 PWLMIRS--PDTACAGGPSPYPR 397
           PW+ ++   P   C G P+P+PR
Sbjct: 137 PWISVQEQVPRFRCIGPPTPFPR 159


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 273 PNSDSGHDFHSGLHNGHPRT 332
           P+   GH  H+   NGHP T
Sbjct: 115 PSPGMGHMGHTPTPNGHPST 134


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 410 VQNKDVDTARALQHKLCLAIESLTKEGPWVPVMKAGME 297
           V + DV++ + ++  L +  +S+ K   WV   KA  E
Sbjct: 171 VSDSDVESYKQIKSDLDVLRQSVEKSELWVYKSKASEE 208


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 549  SCHVREEGTIPWSGHAFSTSGPARHKIEHRN 457
            +C   + GT+  S  + ST  P RH  E  N
Sbjct: 1663 TCDRIKRGTVIRSIRSHSTWDPRRHMYEELN 1693


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -1

Query: 607 PISQ--ASSSLRTI*AKRLKCFVPCPRRRHYS 518
           P+ Q  +SS+  T     ++CF   PR+ H S
Sbjct: 279 PVKQHRSSSASTTCSGHTVRCFTGGPRKSHES 310


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 410 VQNKDVDTARALQHKLCLAIESLTKEGPWVPVMKAGME 297
           V + DV++ + ++  L +  +S+ K   WV   KA  E
Sbjct: 139 VSDSDVESYKQIKSDLDVLRQSVEKSELWVYKSKASEE 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,173
Number of Sequences: 438
Number of extensions: 5125
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)