Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c24
         (740 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            25   3.2  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            25   3.2  
AJ237706-1|CAB40347.1|  570|Anopheles gambiae putative 5'-nucleo...    24   5.7  
AJ000034-1|CAA03870.1|   98|Anopheles gambiae 5'-nucleotidase pr...    24   5.7  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 164  KLNNLIKVTNNNKRTNRYKQKKIDISSF 247
            K+ NLI  T+N  R+NRY+ +  ++ +F
Sbjct: 1617 KVENLI--TSNESRSNRYEIRSNNVQTF 1642


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 164  KLNNLIKVTNNNKRTNRYKQKKIDISSF 247
            K+ NLI  T+N  R+NRY+ +  ++ +F
Sbjct: 1618 KVENLI--TSNESRSNRYEIRSNNVQTF 1643


>AJ237706-1|CAB40347.1|  570|Anopheles gambiae putative
           5'-nucleotidase protein.
          Length = 570

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 567 HLRNCNSKIKNTNQKCSKC-NLNFTPADLFKHLKIQHAVKQVNKNF 433
           H+ + +++   TNQK S C N     A +    ++ H +KQ+   +
Sbjct: 40  HINDLHARFDETNQKSSTCTNSKECIAGI---ARVYHTIKQLKSEY 82


>AJ000034-1|CAA03870.1|   98|Anopheles gambiae 5'-nucleotidase
           protein.
          Length = 98

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 567 HLRNCNSKIKNTNQKCSKC-NLNFTPADLFKHLKIQHAVKQVNKNF 433
           H+ + +++   TNQK S C N     A +    ++ H +KQ+   +
Sbjct: 40  HINDLHARFDETNQKSSTCTNSKECIAGI---ARVYHTIKQLKSEY 82


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,165
Number of Sequences: 2352
Number of extensions: 11673
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76091949
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)