Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c24
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038623-2|AAB94158.1|  342|Caenorhabditis elegans Seven tm rece...    30   1.5  
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    29   3.5  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      29   3.5  
AF047657-3|AAK18947.2|  326|Caenorhabditis elegans Serpentine re...    29   4.6  
AF043700-7|AAB97573.2|  165|Caenorhabditis elegans Hypothetical ...    28   6.0  

>AF038623-2|AAB94158.1|  342|Caenorhabditis elegans Seven tm
           receptor protein 166 protein.
          Length = 342

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +2

Query: 161 NKLNNLIKVTNNNKRTNRYKQKKIDISSFPIKYVIFDGLNNISFHVYIRCFVS*MSTFDF 340
           N L   + +T + K+   YK   I  S+F + + + D +     H Y  CF   MS  D+
Sbjct: 23  NSLLIYLIITKSPKKMGNYKALMIYFSTFSMVFAVIDMIVQPFIHSYGSCFFMIMSIKDW 82


>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
           protein Y102A11A.3 protein.
          Length = 1571

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 582 MSGESHLRNCNSKIKNTNQKCSKCNLNFTPADLFKHLKIQ-HAVKQVNKNFDIVEI 418
           +S ++ L+  NSK+    +   + +L     D   H  IQ H +  +N N +IVEI
Sbjct: 801 ISMDTTLKTVNSKVLINTEFLQENSLTINVIDSCYHENIQNHVLSSINNNLEIVEI 856


>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -3

Query: 585  KMSGESHLRNCNSKIKNTNQKCSKCNLNFTPADLFKHLKIQHAVKQVNKNFDIVEIHR 412
            KMSG   L +    ++N   K     ++  P D   H +I  +++Q   N  + E  R
Sbjct: 988  KMSGRLCLESARKDVQNNVDKMYNDYMDLDPLDKELHFEISQSIRQSKLNESLEEYER 1045


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -3

Query: 585  KMSGESHLRNCNSKIKNTNQKCSKCNLNFTPADLFKHLKIQHAVKQVNKNFDIVEIHR 412
            KMSG   L +    ++N   K     ++  P D   H +I  +++Q   N  + E  R
Sbjct: 988  KMSGRLCLESARKDVQNNVDKMYNDYMDLDPLDKELHFEISQSIRQSKLNESLEEYER 1045


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -3

Query: 585  KMSGESHLRNCNSKIKNTNQKCSKCNLNFTPADLFKHLKIQHAVKQVNKNFDIVEIHR 412
            KMSG   L +    ++N   K     ++  P D   H +I  +++Q   N  + E  R
Sbjct: 988  KMSGRLCLESARKDVQNNVDKMYNDYMDLDPLDKELHFEISQSIRQSKLNESLEEYER 1045


>AF047657-3|AAK18947.2|  326|Caenorhabditis elegans Serpentine
           receptor, class h protein272 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 544 FRITVSKVTFTRHFILPENVRRLFFICILSFGPPFKSLPNKTTFID 681
           F +  +  +F R+F  P  +    FI +L F PP+ S+PN+   +D
Sbjct: 117 FYVMFALDSFWRYFRFPFFLFN-HFIAVLFFVPPYLSIPNQNMALD 161


>AF043700-7|AAB97573.2|  165|Caenorhabditis elegans Hypothetical
           protein K09H9.7 protein.
          Length = 165

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 525 KCSKCNLNFTPADLFKHLKIQHAVK 451
           +C KC+ N T  +L+KH+K QH  K
Sbjct: 84  RCCKCSDNVTIPNLYKHMK-QHVEK 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,997,889
Number of Sequences: 27780
Number of extensions: 269621
Number of successful extensions: 648
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)