Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13c22
(219 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual 32 0.009
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 0.44
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual 24 3.1
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc... 23 5.5
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 23 7.2
SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces pom... 23 7.2
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 23 7.2
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 23 7.2
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 23 7.2
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 22 9.6
SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe... 22 9.6
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 22 9.6
>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 304
Score = 32.3 bits (70), Expect = 0.009
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 8 KQILRCYSINRRSEQPLHFHITSFGE--KSRNDMSRHNGYENW 130
+Q+ RC+S NR + P+ T+FG K+R D NW
Sbjct: 117 QQVTRCHSANRTALHPVELFATNFGGRLKTRQDFVLKGQQNNW 159
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.6 bits (56), Expect = 0.44
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = -3
Query: 175 KGHYLNKYKNKNSYIPVF 122
K ++LN +++KN Y+P+F
Sbjct: 3515 KEYWLNLFRSKNIYVPIF 3532
>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 23.8 bits (49), Expect = 3.1
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +2
Query: 32 INRRSEQPLHFHITSFG 82
+ R+ +PLHFH+ + G
Sbjct: 279 VESRNNEPLHFHVDNNG 295
>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 23.0 bits (47), Expect = 5.5
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = -3
Query: 196 NLAFIV*KGHYLNK--YKNKNSYIPVFIAIVSRHIISRFLT 80
NL F++ + YL K +++K +F A++ RH+ SR+ T
Sbjct: 74 NLPFLLVR--YLPKLEFESKKDTGLIFSALLRRHVASRYPT 112
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 41 RSEQPLHFHITSFGEKSRNDMSRH 112
R + L+FH TS SRN + H
Sbjct: 581 RVVKSLNFHATSLLRSSRNTLDLH 604
>SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 22.6 bits (46), Expect = 7.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +2
Query: 74 SFGEKSRNDMSRHNGYEN 127
+F ND+S +GYEN
Sbjct: 6 NFSPSQSNDLSTSSGYEN 23
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 133 CKNFYFCIYLNNVLFKQ*MLNFEKVH 210
C +F CI +L+ + NFE +H
Sbjct: 548 CGDFLCCIVSTGLLYIWNIKNFEAIH 573
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 22.6 bits (46), Expect = 7.2
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = -2
Query: 53 VVLTVCLWNN 24
VV+ CLWNN
Sbjct: 919 VVIAACLWNN 928
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -3
Query: 208 ALFQNLAFIV*KGHYLNKYKNKNSYIPVFI 119
++ L F++ + YL ++ +Y+PVFI
Sbjct: 73 SILGTLLFVIAESLYLISGSDELAYVPVFI 102
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 22.2 bits (45), Expect = 9.6
Identities = 6/20 (30%), Positives = 14/20 (70%)
Frame = -3
Query: 106 RHIISRFLTKTSYVKMQWLF 47
RH++SR +T ++++W +
Sbjct: 81 RHLLSRSVTDAPSLRVRWFY 100
>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 136 YIPVFIAIVSRHIISR 89
YIPVF+ I +I+ R
Sbjct: 15 YIPVFLIIFGTYIVKR 30
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/26 (30%), Positives = 11/26 (42%)
Frame = +2
Query: 53 PLHFHITSFGEKSRNDMSRHNGYENW 130
P F + + E ND H+ E W
Sbjct: 412 PAEFELETTQEVEENDSDSHDDEETW 437
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 841,485
Number of Sequences: 5004
Number of extensions: 12705
Number of successful extensions: 31
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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