Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c22
         (219 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0590 + 30177711-30178133,30178761-30179120,30179576-30180004     38   0.001
06_01_1080 + 8836289-8836347,8836525-8836783,8836911-8837444,883...    27   2.7  
08_02_0204 - 14253258-14253383,14253685-14253878,14254029-142547...    26   3.6  

>02_05_0590 + 30177711-30178133,30178761-30179120,30179576-30180004
          Length = 403

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 8   KQILRCYSINRRSEQPLHFHITSFGEKSRNDMSRHNGYENW 130
           +QI+ CY++N RS  P H  +T    +    + R  GY+ W
Sbjct: 140 QQIMYCYAVNGRSTNPAHLWLTGCNGEMATHLQRIPGYDKW 180


>06_01_1080 +
           8836289-8836347,8836525-8836783,8836911-8837444,
           8837527-8837636,8843938-8844129,8845062-8845203
          Length = 431

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 65  HITSFGEKSRNDMSRHNGYENWDV 136
           H  +  EK R + SRH   ENW++
Sbjct: 372 HAENLEEKRRKEESRHLPIENWNI 395


>08_02_0204 - 14253258-14253383,14253685-14253878,14254029-14254743,
            14254811-14254837,14258779-14258838,14263174-14264844,
            14267402-14267518,14267593-14267763,14270248-14270346,
            14271684-14271770,14272392-14272475,14272929-14273068,
            14274414-14274494,14275492-14275680,14275986-14276022
          Length = 1265

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 157  KYKNKNSYIPVFIAIVSRHIISRFLTKTSYVK 62
            K ++ +S IP+F+A++ R  +S  L+  S  K
Sbjct: 1197 KIQHIHSEIPIFVAVIKRSNVSGVLSTLSVAK 1228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,838,052
Number of Sequences: 37544
Number of extensions: 66923
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)