Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c22
         (219 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            21   6.8  
AJ549085-1|CAD70159.1|  529|Anopheles gambiae thioredoxin-disulf...    20   9.0  
AJ549084-1|CAD70158.1|  505|Anopheles gambiae thioredoxin-disulf...    20   9.0  
AJ459821-1|CAD30858.1|  502|Anopheles gambiae thioredoxin reduct...    20   9.0  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 114 LCLDISFLDFSPKLVM*KCSGCS 46
           LC+ I     +P+L M  C  CS
Sbjct: 328 LCVSILGTLITPELWMKNCKSCS 350


>AJ549085-1|CAD70159.1|  529|Anopheles gambiae thioredoxin-disulfide
           reductase protein.
          Length = 529

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 34  YGITSQDLF 8
           YGITS D+F
Sbjct: 203 YGITSDDIF 211


>AJ549084-1|CAD70158.1|  505|Anopheles gambiae thioredoxin-disulfide
           reductase protein.
          Length = 505

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 34  YGITSQDLF 8
           YGITS D+F
Sbjct: 179 YGITSDDIF 187


>AJ459821-1|CAD30858.1|  502|Anopheles gambiae thioredoxin reductase
           protein.
          Length = 502

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 34  YGITSQDLF 8
           YGITS D+F
Sbjct: 176 YGITSDDIF 184


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,623
Number of Sequences: 2352
Number of extensions: 3929
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 563,979
effective HSP length: 50
effective length of database: 446,379
effective search space used:  9820338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)