Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c22
         (219 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC028373-1|AAH28373.1|  339|Homo sapiens RNA (guanine-9-) methyl...    43   2e-04
AF106046-1|AAD21019.1|  233|Homo sapiens unknown protein.              43   2e-04

>BC028373-1|AAH28373.1|  339|Homo sapiens RNA (guanine-9-)
           methyltransferase domain containing 2 protein.
          Length = 339

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = +2

Query: 8   KQILRCYSINRRSEQPLHFHITSFGEKSRNDMSRHN-GYENW 130
           KQI RCY+ NRR+  P+ F++TS G + + +M  ++ G+ NW
Sbjct: 123 KQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNW 164


>AF106046-1|AAD21019.1|  233|Homo sapiens unknown protein.
          Length = 233

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = +2

Query: 8   KQILRCYSINRRSEQPLHFHITSFGEKSRNDMSRHN-GYENW 130
           KQI RCY+ NRR+  P+ F++TS G + + +M  ++ G+ NW
Sbjct: 17  KQIQRCYAENRRALHPVQFYLTSHGGQLKKNMDENDKGWVNW 58


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,343,923
Number of Sequences: 237096
Number of extensions: 379892
Number of successful extensions: 473
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 76,859,062
effective HSP length: 51
effective length of database: 64,767,166
effective search space used: 1360110486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)