Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c22
         (219 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089688-1|AAL90426.1|  319|Drosophila melanogaster RH65902p pro...    42   9e-05
AE014298-3180|AAF50950.1|  319|Drosophila melanogaster CG14618-P...    42   9e-05
AY119619-1|AAM50273.1|  446|Drosophila melanogaster LD44982p pro...    26   8.2  
AE013599-2706|AAF57683.1|  446|Drosophila melanogaster CG5190-PA...    26   8.2  

>AY089688-1|AAL90426.1|  319|Drosophila melanogaster RH65902p
           protein.
          Length = 319

 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 5   IKQILRCYSINRRSEQPLHFHITSFGEKS--RNDMSRHNGYENWDVR 139
           +KQ LR Y+INRRS QP + H T             ++ G+ENW V+
Sbjct: 116 VKQCLRIYTINRRSPQPGNLHFTGIRRNGHIHESFKKNEGWENWHVQ 162


>AE014298-3180|AAF50950.1|  319|Drosophila melanogaster CG14618-PA
           protein.
          Length = 319

 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 5   IKQILRCYSINRRSEQPLHFHITSFGEKS--RNDMSRHNGYENWDVR 139
           +KQ LR Y+INRRS QP + H T             ++ G+ENW V+
Sbjct: 116 VKQCLRIYTINRRSPQPGNLHFTGIRRNGHIHESFKKNEGWENWHVQ 162


>AY119619-1|AAM50273.1|  446|Drosophila melanogaster LD44982p
           protein.
          Length = 446

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 8   KQILRCYSINRRSEQP--LHFHITSFGEKSRNDMSRH 112
           KQ++ C++ NR +++P  LH+  T    +    + R+
Sbjct: 213 KQLMMCFAENRMNDEPFDLHYCNTQMDSRCMQSLQRY 249


>AE013599-2706|AAF57683.1|  446|Drosophila melanogaster CG5190-PA
           protein.
          Length = 446

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 8   KQILRCYSINRRSEQP--LHFHITSFGEKSRNDMSRH 112
           KQ++ C++ NR +++P  LH+  T    +    + R+
Sbjct: 213 KQLMMCFAENRMNDEPFDLHYCNTQMDSRCMQSLQRY 249


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,584,275
Number of Sequences: 53049
Number of extensions: 129116
Number of successful extensions: 187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 24,988,368
effective HSP length: 52
effective length of database: 22,229,820
effective search space used: 444596400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)