Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13c22
(219 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69360-9|CAN86601.1| 296|Caenorhabditis elegans Hypothetical pr... 35 0.009
Z69360-8|CAA93284.1| 297|Caenorhabditis elegans Hypothetical pr... 35 0.009
L09634-2|AAA27966.1| 504|Caenorhabditis elegans Proteasome regu... 27 1.4
Z49125-7|CAN99660.1| 717|Caenorhabditis elegans Hypothetical pr... 25 5.5
Z49125-6|CAA88937.2| 776|Caenorhabditis elegans Hypothetical pr... 25 5.5
Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical pr... 25 9.6
Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical pr... 25 9.6
U88178-7|ABA03111.1| 439|Caenorhabditis elegans Hypothetical pr... 25 9.6
U64851-2|AAC47987.1| 613|Caenorhabditis elegans Hypothetical pr... 25 9.6
U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily ass... 25 9.6
AC006676-2|AAK71382.3| 439|Caenorhabditis elegans Hypothetical ... 25 9.6
>Z69360-9|CAN86601.1| 296|Caenorhabditis elegans Hypothetical
protein F25H8.1b protein.
Length = 296
Score = 34.7 bits (76), Expect = 0.009
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 5 IKQILRCYSINRRSEQPLHFHITSFGEKSRN--DMSRHN 115
++QI CY+ NR S P FH+ F SR D + HN
Sbjct: 107 VQQIGWCYTANRHSPDPFQFHVVGFDGPSRKIYDGNEHN 145
>Z69360-8|CAA93284.1| 297|Caenorhabditis elegans Hypothetical
protein F25H8.1a protein.
Length = 297
Score = 34.7 bits (76), Expect = 0.009
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 5 IKQILRCYSINRRSEQPLHFHITSFGEKSRN--DMSRHN 115
++QI CY+ NR S P FH+ F SR D + HN
Sbjct: 108 VQQIGWCYTANRHSPDPFQFHVVGFDGPSRKIYDGNEHN 146
>L09634-2|AAA27966.1| 504|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 3 protein.
Length = 504
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 14 ILRCYSINRRSEQPLHF--HITSFGEKSRNDMSRHNGYE 124
+LRCY INR+ + H + S ND++R+ Y+
Sbjct: 222 LLRCYLINRQYQSAAHLVSKVAFPDNASNNDLARYMYYQ 260
>Z49125-7|CAN99660.1| 717|Caenorhabditis elegans Hypothetical
protein C47G2.5b protein.
Length = 717
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +2
Query: 5 IKQILRCYSINRRSEQPLHFHITSFGEKSRNDMSRHNGYENW 130
++ I+ Y++ R + F+ +S RND N E W
Sbjct: 500 LEDIIHLYNLKHRPQMQHDFNDSSVVSSIRNDSHGFNDSEEW 541
>Z49125-6|CAA88937.2| 776|Caenorhabditis elegans Hypothetical
protein C47G2.5a protein.
Length = 776
Score = 25.4 bits (53), Expect = 5.5
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +2
Query: 5 IKQILRCYSINRRSEQPLHFHITSFGEKSRNDMSRHNGYENW 130
++ I+ Y++ R + F+ +S RND N E W
Sbjct: 500 LEDIIHLYNLKHRPQMQHDFNDSSVVSSIRNDSHGFNDSEEW 541
>Z81122-3|CAB54313.1| 1076|Caenorhabditis elegans Hypothetical protein
T13F2.3b protein.
Length = 1076
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 35 NRRSEQPLHFHITSFGEKSRNDMSR 109
N+ + + FH+T F E ++ND+ R
Sbjct: 933 NKPVFEDIEFHVTRFVEPNQNDLVR 957
>Z81122-2|CAB03354.1| 1074|Caenorhabditis elegans Hypothetical protein
T13F2.3a protein.
Length = 1074
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 35 NRRSEQPLHFHITSFGEKSRNDMSR 109
N+ + + FH+T F E ++ND+ R
Sbjct: 931 NKPVFEDIEFHVTRFVEPNQNDLVR 955
>U88178-7|ABA03111.1| 439|Caenorhabditis elegans Hypothetical
protein W09C3.1 protein.
Length = 439
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = -3
Query: 175 KGHYLNKYKNKNSYIPVFIAIVSRHIISRFLTKTSYVKM 59
K +LN+Y +K+S++ F+ +V ++ + Y+K+
Sbjct: 252 KEDHLNEYLSKDSFLSSFLPLVEYLNSVQYADRPDYMKI 290
>U64851-2|AAC47987.1| 613|Caenorhabditis elegans Hypothetical
protein F28A12.1 protein.
Length = 613
Score = 24.6 bits (51), Expect = 9.6
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 166 YLNKYKNKN-SYIPVFIAIVSRHIISRFLTKTSYVK 62
+L + N++ SYI IAI++ H + F T S VK
Sbjct: 420 WLTRETNRSASYIRQNIAIINIHFMELFYTSYSQVK 455
>U39996-7|AAA81093.1| 1667|Caenorhabditis elegans Temporarily assigned
gene nameprotein 177 protein.
Length = 1667
Score = 24.6 bits (51), Expect = 9.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 2 VIKQILRCYSINRRSEQPLHFHITSFGEKSRNDMSRHNGYENW 130
+IKQI+ YSI +P+ I + + D+S H + +W
Sbjct: 1126 LIKQIVSFYSILCSKRRPIRDTINTETLSNFFDLSNHYIFRDW 1168
>AC006676-2|AAK71382.3| 439|Caenorhabditis elegans Hypothetical
protein M04F3.3 protein.
Length = 439
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = -3
Query: 175 KGHYLNKYKNKNSYIPVFIAIVSRHIISRFLTKTSYVKM 59
K +LN+Y +K+S++ F+ +V ++ + Y+K+
Sbjct: 252 KEDHLNEYLSKDSFLSSFLPLVEYLNSVQYADRPDYMKI 290
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,635,128
Number of Sequences: 27780
Number of extensions: 71830
Number of successful extensions: 151
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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