Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c21
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical ...    32   0.50 
AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock tr...    31   1.2  
AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock tr...    31   1.2  
AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U41034-1|AAN72428.1|  117|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U23183-1|AAY86251.1|  117|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched relat...    29   4.7  
Z79759-1|CAB02138.2|  841|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical...    28   6.2  
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical...    28   6.2  

>AC024877-2|AAF60905.2|  608|Caenorhabditis elegans Hypothetical
           protein Y95B8A.7 protein.
          Length = 608

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -2

Query: 300 DKLYSEFYSLLNE--TFNNNVAPLLSSIYDEV-LTRDFITKNMAKFKTVALKLPVAPSTT 130
           D+  +E Y+ LN    F +NV  L+S I + +    D I +++ K     ++LP   +TT
Sbjct: 260 DRTINEKYAGLNPGVEFISNVDRLISDINESLKYVSDKIERDVRKIPEDVVELPTTTTTT 319

Query: 129 EYVPTSISGSKK 94
           E  P ++ G  +
Sbjct: 320 EQPPRTVLGCSR 331


>AY559748-1|AAS72410.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 342 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 214
           N+     K+ C++ + L  E     +  F NN  PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350


>AY559747-1|AAS72409.1|  671|Caenorhabditis elegans heat shock
           transcription factor 1 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 342 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 214
           N+     K+ C++ + L  E     +  F NN  PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350


>AL033536-5|CAA22146.1|  671|Caenorhabditis elegans Hypothetical
           protein Y53C10A.12 protein.
          Length = 671

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 342 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 214
           N+     K+ C++ + L  E     +  F NN  PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350


>Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical
           protein T06E6.6 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 514 ATRPLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHY 639
           A  PLG+L     VPT  Q  F+  N  ++   HF  V+ +R+Y
Sbjct: 72  AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114


>Z81508-8|CAI58634.1|  294|Caenorhabditis elegans Hypothetical
           protein F20E11.15 protein.
          Length = 294

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
 Frame = +1

Query: 433 THLFSVIKNEHKICQFGRVFHQIPHGRATRPLGLLDLSVP---TVKQNVFIVV---NHLL 594
           T LF++I +   IC+ G+  ++ P       L L+D+ +     V  ++F+ V   N+LL
Sbjct: 186 TLLFAIILSLKLICKAGKTTNKDPTMNRANRLALIDVIIIFFFDVLLSIFLTVFDQNNLL 245

Query: 595 LAFGHFAFVLHD 630
              G FA VL +
Sbjct: 246 TNSGPFASVLRE 257


>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
            B0024.8 protein.
          Length = 1185

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -2

Query: 645  LNVMPVMQDERKMSKRKKKVINNNKYILFN--SWYTKIKQPEWPSSPAMWDLVKNT 484
            ++++P M    K S  K++     +Y   +  ++ +K KQ E  + P +WD VKN+
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNS 1138


>U41034-1|AAN72428.1|  117|Caenorhabditis elegans Hypothetical
           protein M02D8.6 protein.
          Length = 117

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 713 NPTMDQXNCYCKFSWKKRTLTI 648
           NP +D+ +CYCK S   R +T+
Sbjct: 83  NPDVDEVSCYCKVSRCNRIVTV 104


>U23183-1|AAY86251.1|  117|Caenorhabditis elegans Hypothetical
           protein K01A12.4 protein.
          Length = 117

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 713 NPTMDQXNCYCKFSWKKRTLTI 648
           NP +D+ +CYCK S   R +T+
Sbjct: 83  NPDVDEVSCYCKVSRCNRIVTV 104


>AF043697-2|AAB97556.1|  820|Caenorhabditis elegans Patched related
           family protein 11 protein.
          Length = 820

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 68  CLAGTEFFLFLLPLIEVGTYSVV 136
           C AG   FL +LPLI V TY++V
Sbjct: 739 CEAGLSTFLCMLPLIFVPTYAIV 761


>Z79759-1|CAB02138.2|  841|Caenorhabditis elegans Hypothetical
           protein ZK858.1 protein.
          Length = 841

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 141 PSTTEYVPTSISGSKKRKNSVPAKQRSSIKNRRNTXCGSNTF 16
           P  + Y   + + S K +N+ P +QR SI+N      GS+ +
Sbjct: 615 PPPSRYAAGTAAPSHKHRNAHPQRQRPSIRNLSQGSDGSDEY 656


>AL132877-17|CAB60849.2|  269|Caenorhabditis elegans Hypothetical
           protein Y105E8B.7 protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +3

Query: 264 RLTSCKTPNKAYRAFRSSLLILPNLRW*APQSVFFCSLELLRCRLKTTMSIGR 422
           RL  C   +  Y+A    LL LP+ +    Q+    S +L RC   T M IGR
Sbjct: 211 RLNECTDSHVIYKA-SEYLLTLPDTK--LSQTTLKLSFDLSRCDSTTLMDIGR 260


>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
            protein Y47G6A.17 protein.
          Length = 1736

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -1

Query: 412  DIVVFKRQRSNSSEQKKTDCGAYQRKFGRIKRELRNAR*ALFGVLQLVKRDIQ 254
            ++  F+R   NS E++ TD      +     R LRNA   +   L  +K+ ++
Sbjct: 1345 ELSTFRRNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVE 1397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,986,622
Number of Sequences: 27780
Number of extensions: 362905
Number of successful extensions: 1087
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)