Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c20
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   4.1  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   7.2  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   7.2  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   7.2  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   9.5  

>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = -2

Query: 792 CMRCRRSFAVYPAVTYLH---CGHS-CLCTDCDETVNVDN-TCPKCKSGIRYKLKYKTL 631
           CM C +      A+T  +   CGH+ C          V+N +CP CK  IR+ L  +T+
Sbjct: 192 CMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLVNNVSCPICKHRIRFALPDQTM 250


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 646  QFISNAAFTFRTRIVHVYRFVAIGAQTRMSAMQI 747
            Q++SN +   RT ++ +   V+   +T+MSA Q+
Sbjct: 996  QYLSNMSHEIRTPLIGITGMVSFLLETQMSAEQL 1029


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = -2

Query: 789 MRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYK 649
           +R    F    ++ +L C  S   T+  + + ++  C KCK  +R++
Sbjct: 192 LRANCPFTDCNSINHLTCLASSFLTEECQVLPIEGMCTKCKRVLRWR 238


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/45 (22%), Positives = 25/45 (55%)
 Frame = -3

Query: 272 TCITLQQLVKMYSPEFGLCVNSKNMFVLTESVLTSISLKHSFGKC 138
           +C+++   ++ Y+P  GL  +S  M      +L++++ +   G+C
Sbjct: 247 SCLSVHPTIQEYNPRSGLAQSSMVMCYTCYLILSALANRPDEGQC 291


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/34 (26%), Positives = 22/34 (64%)
 Frame = -3

Query: 242 MYSPEFGLCVNSKNMFVLTESVLTSISLKHSFGK 141
           ++SP+ GL  N+ ++  +  S+ T++  +H++ K
Sbjct: 771 LFSPDGGLVANAPHVPAMLGSMQTAVKWQHNYWK 804


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,579
Number of Sequences: 5004
Number of extensions: 59135
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)