Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13c19
(445 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.24
SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5) 31 0.32
SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_6351| Best HMM Match : IncA (HMM E-Value=0.13) 29 1.3
SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4) 29 1.7
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37) 29 1.7
SB_36647| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_38155| Best HMM Match : DUF414 (HMM E-Value=4.4) 28 3.0
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17) 28 3.0
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20) 28 4.0
SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 27 5.3
SB_19185| Best HMM Match : DUF1269 (HMM E-Value=0.28) 27 5.3
SB_59688| Best HMM Match : K-box (HMM E-Value=0.25) 27 7.0
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 27 7.0
SB_43942| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 27 7.0
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1) 27 9.2
SB_43079| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_40339| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 31.9 bits (69), Expect = 0.24
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 216 YIGSNLVHFGELLTDLGLADGWFSWM*DIANHLLARQQSVGHEFASANS 362
+I N +F + DLG+A + + + +H L R Q+VGH FA S
Sbjct: 289 FIDFNDFYFSNRVVDLGIALAYIMMLPQVNSH-LTRPQAVGHMFAGYQS 336
>SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)
Length = 585
Score = 31.5 bits (68), Expect = 0.32
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = -2
Query: 288 RKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVNWIRFDLRHTRSGQEVRTQAQ 109
R+T++ DR A+ NV S V++R D ++ V+ ++ D R + SGQ+V ++
Sbjct: 281 RRTSQSNDR----AQGNVTVVSTAHVQVRADD-VQAMNVSGVKSDGRPSSSGQDVYDGSR 335
Query: 108 VSSPRPVREEEAHAQT 61
S+ P E AQT
Sbjct: 336 QSTHGPALPWEELAQT 351
>SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 122 EPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKV 3
E K + + +KK+ +K++K +KN+ K + KK K+
Sbjct: 16 EKKRKKKKQKKKKKKKKKKKKKKNKKNKKNKNKNKKKKKM 55
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 131 KKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 6
K+ + K + + +KK+ K+ K+ KN+ KK + KK K
Sbjct: 18 KRKKKKQKKKKKKKKKKKKKKNKKNKKNKNKNKKKKKMKKKK 59
>SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)
Length = 417
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 116 KHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKV 3
+H LA H +++RP+ R+ K R++K+R S+V
Sbjct: 378 RHGLASHDKKKRERPSLVARERMKKRLRKIREEFGSEV 415
>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
Length = 166
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -3
Query: 116 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 24
+H LA H +++RP+ R+ K R++K+R
Sbjct: 79 RHGLASHDKKKRERPSLVARERMKKRLRKIR 109
>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
Length = 1376
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -3
Query: 143 LDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKV 27
LDL KHR RH EKK K RK +KN M+++
Sbjct: 1000 LDLLLAHATKHRGRRHRS-EKKEKANKARKCQKNYMRRL 1037
>SB_36647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 83 KKRPTRKQRKERKNRMKKVRGTKKSK 6
KKR +KQ+K++K R KK + +K K
Sbjct: 3 KKRKKKKQKKKKKKRKKKKQKKQKKK 28
>SB_38155| Best HMM Match : DUF414 (HMM E-Value=4.4)
Length = 361
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 165 IRFDLRHTRSGQEVRTQAQVSSPRPVREEEAH 70
I+ +H R VRT +QVS+ P++++ H
Sbjct: 269 IKVKPKHRRPPSRVRTSSQVSTEPPIKKDPTH 300
>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
Length = 1249
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -3
Query: 131 KKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 6
+K + + RLA E+KR ++RKE++ + K++ +K +
Sbjct: 202 RKLQEEARLAAQRALEEKRKLEEERKEQERKEKELAELEKKR 243
>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
Length = 1468
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 190 FVLKPNTNTTSGVTL---YILASFSRISVLLTVGFPGCKTSQT 309
F+ PN ++ TL ++ S R+ V+ +VG PGC S T
Sbjct: 904 FISIPNITISNTFTLSWWMLVQSVQRVYVMTSVGNPGCGASPT 946
>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3464
Score = 27.9 bits (59), Expect = 4.0
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Frame = -3
Query: 329 LLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKSTG-FALI 153
LL ++ VL + S T+ +K K K T G +N G + F +
Sbjct: 553 LLVTEEKAPAVLESKPSSNSSTQQPKKAGKKRKATSGPQKQEGRGSNLPPGYALILFVKL 612
Query: 152 YDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKV 3
+ K PK ++ + + + K+ KQ ERK +M++ + K+ V
Sbjct: 613 RVVFLFSDKNYPKEKVRHYDVDQVKKYMEKQLAERKKKMRQEKEMKRKAV 662
>SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -3
Query: 119 PKHRLARHGLYEKKRPTRKQRKERKNRMKK 30
P+ L H L ++ R R+QR ER++R+K+
Sbjct: 21 PQQILFTHRLEQRYRVERRQRLERRHRVKR 50
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +1
Query: 193 VLKPNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVM 342
V+ NT ++ +T +F I +++T C++S TI + NN + +
Sbjct: 137 VIINNTIISTKITTSTTTTFIIIIIIITTSSHHCRSSTTIVVTTNNTITI 186
>SB_19185| Best HMM Match : DUF1269 (HMM E-Value=0.28)
Length = 407
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 116 KHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKV 3
+HRLA +K P+ + R++ K R++++R SKV
Sbjct: 368 RHRLAPSDKKSRKGPSPEAREKIKKRLREIREEFGSKV 405
>SB_59688| Best HMM Match : K-box (HMM E-Value=0.25)
Length = 884
Score = 27.1 bits (57), Expect = 7.0
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = -2
Query: 426 QRHVRVDAELLKIIQNE*RNSDYSHSQIHDQQIVGAQADGLRCLTSRKTNRQQDRDP 256
+ +R E I N N ++ I QA G+ CL R +RQQD P
Sbjct: 659 EAELREQIERKNIESNTESNKEFGSLAIRPTGSESPQARGVWCLPERPRDRQQDGLP 715
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 27.1 bits (57), Expect = 7.0
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Frame = -2
Query: 342 HDQQIVGAQA---DGLRCLTSRKTNRQQDRDP*EARQNVQGYSRCSVRI---RFQDKLRR 181
H++QI A D ++ L+ + Q R+ E R + +S+ +V F++K++
Sbjct: 722 HEEQIQALMAQHEDQVKALSQEYED--QIRELREERDISEKWSKSNVDAPYSEFENKMKE 779
Query: 180 WQVNWIRFDLRHTRSGQEVRTQAQVSSPRPVREEEAHAQ 64
+ ++ R R +E+RT +Q+S P E H +
Sbjct: 780 IKDHYEREIERLGAENEELRTSSQISEPSERSSAEKHVE 818
>SB_43942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 973
Score = 27.1 bits (57), Expect = 7.0
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 295 KTSQTICLRANNLLVMN-LRVRIVAVPSLILNYFQ*FGVYTH 417
K S + LR +NL + + RIV P ++Y + FG+Y H
Sbjct: 245 KRSPKMILRLHNLCWRHAMSCRIVPTPPKAISYRKLFGIYFH 286
>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 1127
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -3
Query: 128 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 24
KFEPKH+ + KKR +RK+ E + + + +R
Sbjct: 1060 KFEPKHK-KKGRSSSKKRHSRKKGHEEQQKKETIR 1093
>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 110 RLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 6
R R G K P + RKE NR++KV + K
Sbjct: 59 RRGRKGHRNHKEPHNRNRKEPGNRIRKVEHNRNRK 93
>SB_47629| Best HMM Match : Vicilin_N (HMM E-Value=1.1)
Length = 599
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 122 EPKHRLARHGLYEKKRPTRKQR-KERKNRMKKVRGTKKSK 6
E K R + E+K+ +K+R KE+K KK R ++ K
Sbjct: 39 EKKERRKKERKKERKKERKKERKKEKKKERKKERKEERKK 78
>SB_43079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 508
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 86 EKKRPTRKQRKERKNRMKKVRGTKKSKV 3
EK K++KE+K + +K TKK KV
Sbjct: 320 EKSDGEGKKKKEKKEKSEKTEDTKKVKV 347
>SB_40339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/68 (23%), Positives = 26/68 (38%)
Frame = -3
Query: 377 SEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGF 198
SEG ++K + + KQ + +PG + + K K Y++ GF
Sbjct: 158 SEGPPRPTSKKPVLKLVSQEKQPAIEGQNPGTTKEIQNDEEGKATKKYEIPAYAYIELGF 217
Query: 197 KTNFGGGK 174
G GK
Sbjct: 218 NDEMGSGK 225
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 26.6 bits (56), Expect = 9.2
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Frame = -3
Query: 332 RLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKT--NFGGGKSTGFA 159
++++ K+ + G T+ K + + K+ K+T + GF +FGGG +GFA
Sbjct: 1002 QMISGKEDAANNYARGHYTIGKEMVEVVMDKIRKMTDQCSGLQGFLIFHSFGGGTGSGFA 1061
Query: 158 -LIYD--TLDLAKK 126
LI + ++D KK
Sbjct: 1062 SLITEHLSVDYGKK 1075
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,752,733
Number of Sequences: 59808
Number of extensions: 312019
Number of successful extensions: 1084
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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