Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13c19
(445 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) simi... 177 4e-45
At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S ... 172 8e-44
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 29 1.1
At5g26850.1 68418.m03203 expressed protein 28 3.3
At1g65280.1 68414.m07402 DNAJ heat shock N-terminal domain-conta... 28 3.3
At1g80680.1 68414.m09467 nucleoporin family protein contains Pfa... 27 5.7
At2g07715.1 68415.m00965 ribosomal protein L2, putative similar ... 27 7.5
At5g51590.1 68418.m06396 DNA-binding protein-related contains Pf... 26 10.0
At5g08780.1 68418.m01041 histone H1/H5 family protein contains P... 26 10.0
At1g58050.1 68414.m06579 helicase domain-containing protein cont... 26 10.0
At1g51010.1 68414.m05734 expressed protein 26 10.0
At1g49230.1 68414.m05519 zinc finger (C3HC4-type RING finger) fa... 26 10.0
>At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) similar
to ribosomal protein S19 GB:445612 [Solanum tuberosum]
and similar to ribosomal protein S24 GB:4506703 [Homo
sapiens]
Length = 133
Score = 177 bits (430), Expect = 4e-45
Identities = 84/126 (66%), Positives = 103/126 (81%), Gaps = 1/126 (0%)
Frame = -3
Query: 380 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVF 204
M+E TIRTRKFMTNRLL+RKQ V DVLHPG+ VSK E++EKLA+MY+V P+ +FVF
Sbjct: 1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60
Query: 203 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 24
F+T+FGGGKS+GF LIYDT++ AKKFEPK+RL R+GL K +RKQ KERKNR KK+R
Sbjct: 61 KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120
Query: 23 GTKKSK 6
G KK+K
Sbjct: 121 GVKKTK 126
>At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S
ribosomal protein S19, Cyanophora paradoxa,
EMBL:CPA245654
Length = 133
Score = 172 bits (419), Expect = 8e-44
Identities = 82/126 (65%), Positives = 101/126 (80%), Gaps = 1/126 (0%)
Frame = -3
Query: 380 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVF 204
M+E TIRTR FMTNRLLARKQ V DVLHPG+ VSK E++EKLA+MY+V P+ +F F
Sbjct: 1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60
Query: 203 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 24
F+T+FGGGKS+G+ LIYDT++ AKKFEPK+RL R+GL K +RKQ KERKNR KK+R
Sbjct: 61 KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120
Query: 23 GTKKSK 6
G KK+K
Sbjct: 121 GVKKTK 126
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 29.5 bits (63), Expect = 1.1
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 221 DVVFVFGFKTNFGGGKSTGFALIYDT 144
DV FV GF T+F G GFA+ + T
Sbjct: 251 DVGFVVGFVTSFAAGLDVGFAIDFAT 276
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 212 FVFGFKTNFGGGKSTGFALIYDT 144
FV GF T+F G TGF + +DT
Sbjct: 110 FVTGFATDFDVGFDTGFTIGFDT 132
>At5g26850.1 68418.m03203 expressed protein
Length = 919
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 341 MTNRLLARKQMVCDVLHPGKPTVSKTEIRE-KLAKMYKVTPDVVFVFGFKTN 189
M +++ ++ D++ P +SK E + K+ + + TPD F+FG + N
Sbjct: 702 MRSKVELSNTIITDIVAKNLPKLSKLEEADVKMQILEQFTPDDAFMFGSRPN 753
>At1g65280.1 68414.m07402 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 598
Score = 27.9 bits (59), Expect = 3.3
Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Frame = -3
Query: 86 EKKRPTRK-QRKERKNR-MKKVRGTKK 12
EK+R +K +RKERK R MKK + TKK
Sbjct: 62 EKERKRKKIERKERKRRDMKKKKKTKK 88
>At1g80680.1 68414.m09467 nucleoporin family protein contains Pfam
profile: PF04096 nucleoporin autopeptidase
Length = 1046
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 3 YFRFLGTTDLLHSVLTFFTLFARGPLLLVQAVAS*PVLG 119
Y RFLG TD+ L F R +++ +S PV+G
Sbjct: 89 YIRFLGNTDVRRLDLDHIVKFHRHEVIVYDDESSKPVVG 127
>At2g07715.1 68415.m00965 ribosomal protein L2, putative similar to
ribosomal protein L2 [Gossypium arboreum] GI:17933133;
contains Pfam profile PF00181: Ribosomal Proteins L2,
RNA binding domain
Length = 307
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 157 KANPVD-LPPPKFVLKPNTNTTSGV 228
K N ++ PP+ +L+P TNT SG+
Sbjct: 82 KMNTIEKFAPPRKILEPTTNTISGL 106
>At5g51590.1 68418.m06396 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 419
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 154 IKANPVDLPPPKFVLKPNTNTTSG 225
I+ PV PP F +P+TNT G
Sbjct: 347 IQPPPVSAPPVSFSHEPSTNTVHG 370
>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family
Length = 457
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 128 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKV 3
K +PK + R +K T+ ++KER+ KK KK+++
Sbjct: 398 KEDPKMKTPRGNNGSEKPSTQLEQKEREKSSKKKPQVKKTRI 439
>At1g58050.1 68414.m06579 helicase domain-containing protein
contains similarity to SP|P24785 Dosage compensation
regulator (Male-less protein) (No action potential
protein) {Drosophila melanogaster}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 1417
Score = 26.2 bits (55), Expect = 10.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 149 DTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 6
D LD+ K HR R+ + + KQ++E K +M+K + K++
Sbjct: 550 DDLDVVKS---NHRARRNSSMAAECSSLKQKQENKKKMQKYKDMLKTR 594
>At1g51010.1 68414.m05734 expressed protein
Length = 171
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -3
Query: 152 YDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 24
+D ++ +K R+ LYEKK+ K++KE + +K +R
Sbjct: 46 FDAIEEVRKKLNDKRMKLQELYEKKKEVMKEKKETPH-LKSLR 87
>At1g49230.1 68414.m05519 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 219
Score = 26.2 bits (55), Expect = 10.0
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 214 TTSGVTLYILASFSRISVLLTVGFPGCKTSQTICL 318
T +GV L SF +S + PG T ICL
Sbjct: 101 TNTGVKRKALKSFQTVSYSTELNLPGLDTECAICL 135
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,114,095
Number of Sequences: 28952
Number of extensions: 209196
Number of successful extensions: 715
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -