Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c18
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    27   1.9  
SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    27   3.4  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   3.4  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    26   5.9  

>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 68  KNRFGKFVINKLYXNKINVHLAVLSNFILTYVTSMRIN 181
           KN+FG F+I K +       L   S F+  +V  + I+
Sbjct: 301 KNKFGNFLIQKCFEYSTEAQLQSFSYFLKKHVKELSID 338


>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 239 FSEVEHHSFFLFGEQNICH 183
           F  V+HHS+F FG + +CH
Sbjct: 243 FYVVDHHSYFCFGGE-LCH 260


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 206  IKKKNDVLLLRIYNFKNMLNHQNSDPANIYIQTNESLS 319
            I K  ++  LR+YN  +     NSD  +  +++NES++
Sbjct: 1160 IVKSFELFALRLYNALSKNYEMNSDIKDCIVESNESMN 1197


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = -2

Query: 671 RQRRSNNLYYAAIETGQRGRVAKRRARSPERHLFDKVTSGWSETATSFRSHRNGSGTRDN 492
           R+R SN   Y+ +         + R+ +PE  L +    G+   ++S  S +  S  R  
Sbjct: 686 RERSSNRNSYSDLSRSSSLSRGRSRSYTPEGRLIESEDKGYRSRSSSPASRKYRSRQRYR 745

Query: 491 RS 486
           RS
Sbjct: 746 RS 747


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,277
Number of Sequences: 5004
Number of extensions: 49822
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)