Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c18
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938...    30   2.0  
03_05_0229 - 22142255-22142344,22142471-22142527,22142621-221427...    29   3.5  
03_01_0050 + 430744-431337,432131-432249,432539-433084,433177-43...    29   3.5  
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557...    29   4.6  
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945...    28   6.1  
09_04_0167 + 15290059-15290188,15290779-15292070                       28   8.0  

>07_01_1199 +
           11391638-11391718,11393477-11393590,11393690-11393826,
           11393905-11394064
          Length = 163

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/56 (23%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = -3

Query: 649 YIMQRLRQGREVEWQRDVREVQRDISLI--KSPAAGLKQRQALEATEMEVEPETIE 488
           +I +R +QG+  + +RD +E+++DI ++  K   +  K +  ++ ++ + E   +E
Sbjct: 107 HITERQKQGKTKQRERDAKELEQDIQMLPKKVTLSTQKTKVVVKVSQQQTEENLME 162


>03_05_0229 -
           22142255-22142344,22142471-22142527,22142621-22142705,
           22143552-22143677,22143750-22143793,22143877-22143999,
           22144078-22144216,22148795-22151292
          Length = 1053

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = +2

Query: 155 TYVTSMRINNDKCSARQIKKKNDVLLLRIYNFKNMLNHQNSDPANIYIQTNESLSIFTYP 334
           T  T +  N D     +IK  +    L IYN KN+ +   ++ AN+ ++T  S  +  + 
Sbjct: 590 TLTTYIVGNGDGYGIEEIKSMDLGGRLEIYNLKNVRDKSKAEAANLSLKTRMSNMLLCWG 649

Query: 335 MTAKHDI 355
           M    ++
Sbjct: 650 MFRNDEV 656


>03_01_0050 +
           430744-431337,432131-432249,432539-433084,433177-433483,
           433605-433773,433861-433960,435805-436103,436796-436869,
           437007-437442,437622-437650
          Length = 890

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = -2

Query: 602 RRARSPERHLFDKVTSGWSETATSFRSHRNG 510
           RRARSPER L  ++   W  TA+S  S R G
Sbjct: 88  RRARSPERALVRRIAREW--TASSRTSPRGG 116


>01_05_0105 -
           18155135-18155297,18155379-18155515,18155621-18155734,
           18155768-18155806,18156838-18156993
          Length = 202

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = -3

Query: 649 YIMQRLRQGREVEWQRDVREVQRDISLIKSPAAGL---KQRQALEATEMEVEPETIE 488
           +I +R +QG+  + +RD +E+++DI ++      L   K +  ++ ++ + E   +E
Sbjct: 145 HITERQKQGKTKQRERDAKELEQDIQMLPKKDTMLSTQKTKVVVKVSQQQTEENLME 201


>02_05_0895 -
           32593155-32593190,32594228-32594279,32594544-32594584,
           32594795-32594906,32595195-32595268,32595349-32595587,
           32595710-32596678,32596725-32596878,32596957-32597244,
           32597393-32597534,32598679-32598752,32598870-32598890
          Length = 733

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 487 LLLSRVPLPFLWLLKLVAVSDQPLVTLSKRCLSGLLARLFATLPL 621
           L L      F W LK+V  +   L  L+K  +  +L  L  TLPL
Sbjct: 458 LFLHNFQQAFTWSLKIVTATKSALSVLTKPIMGPILEVLEFTLPL 502


>09_04_0167 + 15290059-15290188,15290779-15292070
          Length = 473

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -2

Query: 602 RRARSPERHLFDKVTSGWSETATSFRSHRNGSGTRDNRSCGR*RQE 465
           RRA     HL  +  SG   T    R H  G G    +S GR R+E
Sbjct: 32  RRALQRRHHLRSRAESG--ATILELRHHGGGGGGGSGKSGGRSREE 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,185,373
Number of Sequences: 37544
Number of extensions: 294329
Number of successful extensions: 803
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)