Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c18
         (690 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC018973-1|AAH18973.1|  417|Homo sapiens SIN3A protein protein.        31   5.1  
BC001954-1|AAH01954.1|  683|Homo sapiens PRP3 pre-mRNA processin...    31   5.1  
BC000184-1|AAH00184.1|  683|Homo sapiens PRP3 pre-mRNA processin...    31   5.1  
AL611942-1|CAH70312.1|  683|Homo sapiens PRP3 pre-mRNA processin...    31   5.1  
AL117513-1|CAB55972.1|  361|Homo sapiens hypothetical protein pr...    31   5.1  
AK074903-1|BAC11280.1|  573|Homo sapiens protein ( Homo sapiens ...    31   5.1  
AK027559-1|BAB55197.1| 1026|Homo sapiens protein ( Homo sapiens ...    31   5.1  
AF418569-1|AAP97288.1| 1273|Homo sapiens MSIN3A protein.               31   5.1  
AF016370-1|AAC51926.1|  683|Homo sapiens U4/U6 small nuclear rib...    31   5.1  
AF001947-1|AAC09069.1|  682|Homo sapiens U4/U6-associated RNA sp...    31   5.1  
AB023162-1|BAA76789.2|  797|Homo sapiens KIAA0945 protein protein.     30   8.9  

>BC018973-1|AAH18973.1|  417|Homo sapiens SIN3A protein protein.
          Length = 417

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = -3

Query: 628 QGREVEWQRDVREVQRDISLIKSPAAGLKQRQALEATEMEVEPETIEVV 482
           + RE EW+R+V  ++RD S   SPA  L+ ++ ++    +  P  +++V
Sbjct: 64  ENREREWEREVLGIKRDKS--DSPAIQLRLKEPMDVDVEDYYPAFLDMV 110


>BC001954-1|AAH01954.1|  683|Homo sapiens PRP3 pre-mRNA processing
           factor 3 homolog (S. cerevisiae) protein.
          Length = 683

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -3

Query: 607 QRDVREVQRDISLIKSPAAGLKQRQALEATEMEVEPETI 491
           +R+++EV  D S I   ++G+K+R+     E+E EPE I
Sbjct: 88  KRELKEVFGDDSEISKESSGVKKRRIPRFEEVEEEPEVI 126


>BC000184-1|AAH00184.1|  683|Homo sapiens PRP3 pre-mRNA processing
           factor 3 homolog (S. cerevisiae) protein.
          Length = 683

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -3

Query: 607 QRDVREVQRDISLIKSPAAGLKQRQALEATEMEVEPETI 491
           +R+++EV  D S I   ++G+K+R+     E+E EPE I
Sbjct: 88  KRELKEVFGDDSEISKESSGVKKRRIPRFEEVEEEPEVI 126


>AL611942-1|CAH70312.1|  683|Homo sapiens PRP3 pre-mRNA processing
           factor 3 homolog (S. cerevisiae) protein.
          Length = 683

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -3

Query: 607 QRDVREVQRDISLIKSPAAGLKQRQALEATEMEVEPETI 491
           +R+++EV  D S I   ++G+K+R+     E+E EPE I
Sbjct: 88  KRELKEVFGDDSEISKESSGVKKRRIPRFEEVEEEPEVI 126


>AL117513-1|CAB55972.1|  361|Homo sapiens hypothetical protein
           protein.
          Length = 361

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = -3

Query: 628 QGREVEWQRDVREVQRDISLIKSPAAGLKQRQALEATEMEVEPETIEVV 482
           + RE EW+R+V  ++RD S   SPA  L+ ++ ++    +  P  +++V
Sbjct: 8   ENREREWEREVLGIKRDKS--DSPAIQLRLKEPMDVDVEDYYPAFLDMV 54


>AK074903-1|BAC11280.1|  573|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90422 fis, clone NT2RP3000378, weakly similar to
           PAIRED AMPHIPATHIC HELIX PROTEIN. ).
          Length = 573

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = -3

Query: 628 QGREVEWQRDVREVQRDISLIKSPAAGLKQRQALEATEMEVEPETIEVV 482
           + RE EW+R+V  ++RD S   SPA  L+ ++ ++    +  P  +++V
Sbjct: 220 ENREREWEREVLGIKRDKS--DSPAIQLRLKEPMDVDVEDYYPAFLDMV 266


>AK027559-1|BAB55197.1| 1026|Homo sapiens protein ( Homo sapiens cDNA
            FLJ14653 fis, clone NT2RP2002252, highly similar to Mus
            musculus (clone pVZmSin3A9) mSin3A9 mRNA. ).
          Length = 1026

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = -3

Query: 628  QGREVEWQRDVREVQRDISLIKSPAAGLKQRQALEATEMEVEPETIEVV 482
            + RE EW+R+V  ++RD S   SPA  L+ ++ ++    +  P  +++V
Sbjct: 920  ENREREWEREVLGIKRDKS--DSPAIQLRLKEPMDVDVEDYYPAFLDMV 966


>AF418569-1|AAP97288.1| 1273|Homo sapiens MSIN3A protein.
          Length = 1273

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 15/49 (30%), Positives = 29/49 (59%)
 Frame = -3

Query: 628  QGREVEWQRDVREVQRDISLIKSPAAGLKQRQALEATEMEVEPETIEVV 482
            + RE EW+R+V  ++RD S   SPA  L+ ++ ++    +  P  +++V
Sbjct: 920  ENREREWEREVLGIKRDKS--DSPAIQLRLKEPMDVDVEDYYPAFLDMV 966


>AF016370-1|AAC51926.1|  683|Homo sapiens U4/U6 small nuclear
           ribonucleoprotein hPrp3 protein.
          Length = 683

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -3

Query: 607 QRDVREVQRDISLIKSPAAGLKQRQALEATEMEVEPETI 491
           +R+++EV  D S I   ++G+K+R+     E+E EPE I
Sbjct: 88  KRELKEVFGDDSEISKESSGVKKRRIPRFEEVEEEPEVI 126


>AF001947-1|AAC09069.1|  682|Homo sapiens U4/U6-associated RNA
           splicing factor protein.
          Length = 682

 Score = 30.7 bits (66), Expect = 5.1
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -3

Query: 607 QRDVREVQRDISLIKSPAAGLKQRQALEATEMEVEPETI 491
           +R+++EV  D S I   ++G+K+R+     E+E EPE I
Sbjct: 88  KRELKEVFGDDSEISKESSGVKKRRIPRFEEVEEEPEVI 126


>AB023162-1|BAA76789.2|  797|Homo sapiens KIAA0945 protein protein.
          Length = 797

 Score = 29.9 bits (64), Expect = 8.9
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -2

Query: 689 KKVEEIRQRRSNNLYYAAIETGQRGRVAKRRARSPERHLF-DKVTSGWSETATSFRSHRN 513
           +++  +     NNL     +T       + RA  P R    D+ T GWS +    R    
Sbjct: 135 RRLASLNAEALNNLLLEREDTSSLAGTRRSRAGDPHRSRDRDRATGGWSSSKKRPRLGDL 194

Query: 512 GSGTRD 495
           G G+RD
Sbjct: 195 GGGSRD 200


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,567,068
Number of Sequences: 237096
Number of extensions: 1574055
Number of successful extensions: 2995
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2973
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)