Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c18
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81131-1|CAB03423.4|  464|Caenorhabditis elegans Hypothetical pr...    31   0.78 
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/...    31   1.0  
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    31   1.0  
Z81550-7|CAH60764.1|  581|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z81550-6|CAB04481.3|  578|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z70211-6|CAH60769.1|  581|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z70211-5|CAA94160.3|  578|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF273825-1|AAG15174.1|  579|Caenorhabditis elegans nuclear recep...    28   5.5  
AF273824-1|AAG15173.1|  250|Caenorhabditis elegans nuclear recep...    28   5.5  
U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical p...    27   9.6  
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    27   9.6  

>Z81131-1|CAB03423.4|  464|Caenorhabditis elegans Hypothetical
           protein T24D1.2 protein.
          Length = 464

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 26/85 (30%), Positives = 35/85 (41%)
 Frame = -2

Query: 680 EEIRQRRSNNLYYAAIETGQRGRVAKRRARSPERHLFDKVTSGWSETATSFRSHRNGSGT 501
           E +++ +S++   A    G R R A R   SP      + T+G S+   S  S   G GT
Sbjct: 31  ERLQREQSDDTPPAVARRG-RNRAAARERASPYSRSRIRSTAGTSDAGPSSSSSVRGRGT 89

Query: 500 RDNRSCGR*RQETDY*GSGHGTCNR 426
           R   S  R R        G  T NR
Sbjct: 90  RGTTSARRGRGSA---RGGEATMNR 111


>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           c protein.
          Length = 1510

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -2

Query: 614 RVAKRRARSPERHLFDKVTSGWSETATSFR-SHRNGSGTRDNRSCGR*RQET 462
           R  K+R +SP R   D    GW  T  S   + R  SG   NRS  R  Q T
Sbjct: 477 RKKKKRPKSPNRSKKDSRAFGWDSTDESDEDTRRRRSGRSQNRSSERKFQTT 528


>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           a protein.
          Length = 1507

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -2

Query: 614 RVAKRRARSPERHLFDKVTSGWSETATSFR-SHRNGSGTRDNRSCGR*RQET 462
           R  K+R +SP R   D    GW  T  S   + R  SG   NRS  R  Q T
Sbjct: 477 RKKKKRPKSPNRSKKDSRAFGWDSTDESDEDTRRRRSGRSQNRSSERKFQTT 528


>Z81550-7|CAH60764.1|  581|Caenorhabditis elegans Hypothetical
           protein K11E4.5b protein.
          Length = 581

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +2

Query: 71  NRFGKFVINKLYXNKINVHLAVLSNFILTYVTSMRINNDKCSARQIKKKNDVLLLRIYNF 250
           NRF K VI      K+N    V  + +L +  +   +  + + + +K++ D  + R++++
Sbjct: 339 NRFWKNVIRPFVLMKVNDAEVVFLHIMLLWSVTNNEHVTEDTRKVMKQRRDWAMNRLFDW 398

Query: 251 KNMLNHQNSDP 283
            N   H  SDP
Sbjct: 399 YN--EHGTSDP 407


>Z81550-6|CAB04481.3|  578|Caenorhabditis elegans Hypothetical
           protein K11E4.5a protein.
          Length = 578

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +2

Query: 71  NRFGKFVINKLYXNKINVHLAVLSNFILTYVTSMRINNDKCSARQIKKKNDVLLLRIYNF 250
           NRF K VI      K+N    V  + +L +  +   +  + + + +K++ D  + R++++
Sbjct: 336 NRFWKNVIRPFVLMKVNDAEVVFLHIMLLWSVTNNEHVTEDTRKVMKQRRDWAMNRLFDW 395

Query: 251 KNMLNHQNSDP 283
            N   H  SDP
Sbjct: 396 YN--EHGTSDP 404


>Z70211-6|CAH60769.1|  581|Caenorhabditis elegans Hypothetical
           protein K11E4.5b protein.
          Length = 581

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +2

Query: 71  NRFGKFVINKLYXNKINVHLAVLSNFILTYVTSMRINNDKCSARQIKKKNDVLLLRIYNF 250
           NRF K VI      K+N    V  + +L +  +   +  + + + +K++ D  + R++++
Sbjct: 339 NRFWKNVIRPFVLMKVNDAEVVFLHIMLLWSVTNNEHVTEDTRKVMKQRRDWAMNRLFDW 398

Query: 251 KNMLNHQNSDP 283
            N   H  SDP
Sbjct: 399 YN--EHGTSDP 407


>Z70211-5|CAA94160.3|  578|Caenorhabditis elegans Hypothetical
           protein K11E4.5a protein.
          Length = 578

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +2

Query: 71  NRFGKFVINKLYXNKINVHLAVLSNFILTYVTSMRINNDKCSARQIKKKNDVLLLRIYNF 250
           NRF K VI      K+N    V  + +L +  +   +  + + + +K++ D  + R++++
Sbjct: 336 NRFWKNVIRPFVLMKVNDAEVVFLHIMLLWSVTNNEHVTEDTRKVMKQRRDWAMNRLFDW 395

Query: 251 KNMLNHQNSDP 283
            N   H  SDP
Sbjct: 396 YN--EHGTSDP 404


>AF273825-1|AAG15174.1|  579|Caenorhabditis elegans nuclear receptor
           NHR-71 protein.
          Length = 579

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +2

Query: 71  NRFGKFVINKLYXNKINVHLAVLSNFILTYVTSMRINNDKCSARQIKKKNDVLLLRIYNF 250
           NRF K VI      K+N    V  + +L +  +   +  + + + +K++ D  + R++++
Sbjct: 337 NRFWKNVIRPFVLMKVNDAEVVFLHIMLLWSVTNNEHVTEDTRKVMKQRRDWAMNRLFDW 396

Query: 251 KNMLNHQNSDP 283
            N   H  SDP
Sbjct: 397 YN--EHGTSDP 405


>AF273824-1|AAG15173.1|  250|Caenorhabditis elegans nuclear receptor
           NHR-71 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/71 (25%), Positives = 35/71 (49%)
 Frame = +2

Query: 71  NRFGKFVINKLYXNKINVHLAVLSNFILTYVTSMRINNDKCSARQIKKKNDVLLLRIYNF 250
           NRF K VI      K+N    V  + +L +  +   +  + + + +K++ D  + R++++
Sbjct: 8   NRFWKNVIRPFVLMKVNDAEVVFLHIMLLWSVTNNEHVTEDTRKVMKQRRDWAMNRLFDW 67

Query: 251 KNMLNHQNSDP 283
            N   H  SDP
Sbjct: 68  YN--EHGTSDP 76


>U80030-13|AAG24169.1|  831|Caenorhabditis elegans Hypothetical
           protein K12D9.12 protein.
          Length = 831

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
 Frame = +2

Query: 152 LTYVTSMRIN---NDKCSARQIKKKNDVLLLRI---YNFKNMLNHQNSDPANIYIQTNES 313
           L+++T+   N   N  CS   +  KN+  L  I   Y F NM+  +     N  ++ NE 
Sbjct: 439 LSFITTRFPNGPFNFSCSDYGLFIKNNSELNEIDVLYRF-NMIRREGLKECNFEVENNEK 497

Query: 314 LSIFTYPMTAKH 349
           L IF Y     H
Sbjct: 498 LEIFCYTNYLDH 509


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
           protein F53H1.4a protein.
          Length = 1370

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 5   LHAPACDYVEETLTQNALENFKNRFGKFVINKL 103
           L+  AC + E+ L+ N    F+N   KF + KL
Sbjct: 348 LYNEACSWCEKNLSGNQRSTFENPIFKFSVQKL 380


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,627,104
Number of Sequences: 27780
Number of extensions: 279479
Number of successful extensions: 829
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)