Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13c17
(296 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal prot... 112 5e-26
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 29 0.79
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 29 0.79
Z49909-3|CAA90107.2| 603|Caenorhabditis elegans Hypothetical pr... 27 2.4
Z92967-1|CAB07477.1| 220|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z73103-3|CAA97423.1| 540|Caenorhabditis elegans Hypothetical pr... 27 3.2
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 27 3.2
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso... 27 3.2
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 27 3.2
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 27 3.2
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 27 3.2
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein. 27 3.2
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z81523-2|CAB04248.1| 928|Caenorhabditis elegans Hypothetical pr... 26 5.6
Z81523-1|CAB04241.1| 944|Caenorhabditis elegans Hypothetical pr... 26 5.6
U97002-11|AAY86259.1| 121|Caenorhabditis elegans Hypothetical p... 25 7.4
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z73098-8|CAA97334.2| 303|Caenorhabditis elegans Hypothetical pr... 25 9.7
AF016688-3|AAB66076.2| 674|Caenorhabditis elegans Hypothetical ... 25 9.7
>U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 21 protein.
Length = 88
Score = 112 bits (269), Expect = 5e-26
Identities = 52/83 (62%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
Frame = -3
Query: 249 MQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVIADVDPATGR-AADTSKMYVVCGAI 73
MQNDAG+ V+LY PRKCS+SNR+I KDHASVQ+ DVDP TGR S Y +CGAI
Sbjct: 1 MQNDAGQTVELYVPRKCSSSNRIIGPKDHASVQIDFVDVDPETGRMIPGKSTRYAICGAI 60
Query: 72 RRMGESDDCIVRLTKKDGILAKN 4
RRMGESDD I+RL +KDG++ ++
Sbjct: 61 RRMGESDDAILRLAQKDGLVPRD 83
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 28.7 bits (61), Expect = 0.79
Identities = 14/63 (22%), Positives = 27/63 (42%)
Frame = +2
Query: 80 PQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 259
PQ+ + S GS S C AW W++ E + + + N+ ++ +L
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLLTA 851
Query: 260 RPH 268
+P+
Sbjct: 852 QPY 854
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 28.7 bits (61), Expect = 0.79
Identities = 14/63 (22%), Positives = 27/63 (42%)
Frame = +2
Query: 80 PQTTYILDVSAARPVAGSTSAITSCTEAWSLAWMRRLLAEHFLGQYKSTNSPASFCILYV 259
PQ+ + S GS S C AW W++ E + + + N+ ++ +L
Sbjct: 792 PQSAFSNLTSITHIAVGSNSLYCDCNMAWFSKWIKSKFIEAGIARCEYPNTVSNQLLLTA 851
Query: 260 RPH 268
+P+
Sbjct: 852 QPY 854
>Z49909-3|CAA90107.2| 603|Caenorhabditis elegans Hypothetical
protein C14A4.3 protein.
Length = 603
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = -3
Query: 294 FRICQFRVPCGRTYKMQNDAGEFVDLYCPRKCSASNRLIHAKDHASVQLVI 142
F +C + RTY + N+ G V++Y +NR H +++ +
Sbjct: 408 FILCFAILSASRTYSIHNNYGSHVEIYRSLNAELTNRTNFKNFHDPIRVCV 458
>Z92967-1|CAB07477.1| 220|Caenorhabditis elegans Hypothetical
protein T25E12.4b protein.
Length = 220
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 135 VDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDG 19
V + G + +S + A R +G + DC+V +TK++G
Sbjct: 123 VADSEGAGSYSSFSSIASTASRMLGRAADCLVLMTKRNG 161
>Z73103-3|CAA97423.1| 540|Caenorhabditis elegans Hypothetical
protein C08F8.4 protein.
Length = 540
Score = 26.6 bits (56), Expect = 3.2
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +2
Query: 164 WSLAWMRRLLAEHFLGQYKS 223
W++AW+RR++ E G Y++
Sbjct: 359 WTVAWLRRVVYERVEGPYRT 378
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 263 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQY 153
++H+ R TPVN T N RP S ++T+ ++
Sbjct: 839 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEF 877
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -1
Query: 287 SVNSVYRVD-VHIKCRTTPVN 228
SV ++ D +H++CR TP+N
Sbjct: 3191 SVENILEGDSIHLECRVTPIN 3211
>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin
(drosophila actin-binding)homolog protein 1, isoform b
protein.
Length = 4203
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 263 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQY 153
++H+ R TPVN T N RP S ++T+ ++
Sbjct: 756 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEF 794
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -1
Query: 287 SVNSVYRVD-VHIKCRTTPVN 228
SV ++ D +H++CR TP+N
Sbjct: 3108 SVENILEGDSIHLECRVTPIN 3128
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform a protein.
Length = 4488
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 263 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQY 153
++H+ R TPVN T N RP S ++T+ ++
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEF 1115
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -1
Query: 287 SVNSVYRVD-VHIKCRTTPVN 228
SV ++ D +H++CR TP+N
Sbjct: 3429 SVENILEGDSIHLECRVTPIN 3449
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform d protein.
Length = 4369
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 263 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQY 153
++H+ R TPVN T N RP S ++T+ ++
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEF 1115
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -1
Query: 287 SVNSVYRVD-VHIKCRTTPVN 228
SV ++ D +H++CR TP+N
Sbjct: 3429 SVENILEGDSIHLECRVTPIN 3449
>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform c protein.
Length = 4447
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 263 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQY 153
++H+ R TPVN T N RP S ++T+ ++
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEF 1115
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -1
Query: 287 SVNSVYRVD-VHIKCRTTPVN 228
SV ++ D +H++CR TP+N
Sbjct: 3429 SVENILEGDSIHLECRVTPIN 3449
>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
Length = 4219
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 263 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQY 153
++H+ R TPVN T N RP S ++T+ ++
Sbjct: 756 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEF 794
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -1
Query: 287 SVNSVYRVD-VHIKCRTTPVN 228
SV ++ D +H++CR TP+N
Sbjct: 3124 SVENILEGDSIHLECRVTPIN 3144
>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 52 IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 147
+RL+ +DS T FR CG +Y NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131
>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 52 IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 147
+RL+ +DS T FR CG +Y NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131
>Z81523-2|CAB04248.1| 928|Caenorhabditis elegans Hypothetical
protein F32H2.1b protein.
Length = 928
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 260 VHIKCRTTPVNSLTCTARGNARPATASSTLRTMLQ 156
+H+ ++ N + C A+ P AS L MLQ
Sbjct: 695 LHVNSKSCNQNDVHCPAKSTLPPTAASFDLHKMLQ 729
>Z81523-1|CAB04241.1| 944|Caenorhabditis elegans Hypothetical
protein F32H2.1a protein.
Length = 944
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 260 VHIKCRTTPVNSLTCTARGNARPATASSTLRTMLQ 156
+H+ ++ N + C A+ P AS L MLQ
Sbjct: 695 LHVNSKSCNQNDVHCPAKSTLPPTAASFDLHKMLQ 729
>U97002-11|AAY86259.1| 121|Caenorhabditis elegans Hypothetical
protein K09H11.11 protein.
Length = 121
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -2
Query: 196 GQQPPHPR*GPCF 158
GQQPPHP+ P F
Sbjct: 19 GQQPPHPQIDPLF 31
>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical protein
T01D3.7 protein.
Length = 2882
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 50 SSDSPILRIAPQTTYILDVSAARPVAGSTSAITSCTEAWSLA 175
++ P R+ P TT I D +G+TS ++ T + +++
Sbjct: 2472 TTTQPTSRVTPDTTRITDFYTRTTSSGTTSETSTSTSSQTVS 2513
>Z73098-8|CAA97334.2| 303|Caenorhabditis elegans Hypothetical
protein T21C9.7 protein.
Length = 303
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 5 FLASIPSFFVNLTMQSSDSPILRIAPQTTYILDVSAARPVAGSTSAITSCTEAWSLAW 178
F S SF + L + D+ ILR AP + A+ + S I + W++ +
Sbjct: 218 FTVSFVSFIIQL-LALGDTLILRAAPSEGMSVGAQTAKALMPFVSDILTFNHPWTIMY 274
>AF016688-3|AAB66076.2| 674|Caenorhabditis elegans Hypothetical
protein F18A12.4 protein.
Length = 674
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Frame = +1
Query: 1 IVFSQYTIFLC*PHDAIIRLSHPSDS-PTDNIHFRCVSSTTCGGVYVSNH*LY 156
+ F ++ C D I D PTDN + CGGV +S + Y
Sbjct: 616 LYFRVQSLLFCRERDTISLEETLKDVYPTDNFRVNGAYARVCGGVQLSGYITY 668
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,179,434
Number of Sequences: 27780
Number of extensions: 126322
Number of successful extensions: 406
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -