Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13c13
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.81
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 28 1.4
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 27 1.9
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 27 2.5
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po... 27 3.3
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual 26 5.7
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 5.7
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb... 25 7.5
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 25 7.5
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 25 9.9
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.81
Identities = 29/133 (21%), Positives = 63/133 (47%), Gaps = 3/133 (2%)
Frame = +3
Query: 279 TSLEPNRFRLRPSDRFCGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRLASCAV 458
+SL + +PS +S PTS ++ S ++ + + + S+ L S ++
Sbjct: 176 SSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSL 235
Query: 459 SRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATV---NFCVRSSILAITSFVS 629
S + S + S+S +T SL++ S AS+ S+ +++ + SS + +S +S
Sbjct: 236 S----TSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTIS 291
Query: 630 ISTAGAYLPVHST 668
S++ + P ++
Sbjct: 292 SSSSSSSSPTSTS 304
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -2
Query: 619 DVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLAN 440
D +KID LT+KL VAN AE N +L A E + + + + +E Q N
Sbjct: 618 DSASKIDSLTEKLKVAN---AEKNAALCEAALEKVPLAKHNKLSDGTFSTPDKENVQSTN 674
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = -2
Query: 565 DLAEANRSLILF----ANEMIVARRDAETARQDCENARRETAQLAN 440
DL +ANR L ANE + +RD R+D + +R+ QL N
Sbjct: 318 DLLDANRILSTACKKAANEKLAVQRDLSKLREDRLSVQRKKIQLRN 363
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 27.1 bits (57), Expect = 2.5
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = -2
Query: 343 AFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVKEAIPRNKFKAKHN 185
++ R + RS+GR ++ + + +PN+ N L+ V+ IP+N+ K KH+
Sbjct: 285 SYFREKVRSVGRLVRA-----ICILNHPIPNTDN-LDSVQIIIPQNQVKRKHD 331
>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 399
Score = 26.6 bits (56), Expect = 3.3
Identities = 14/75 (18%), Positives = 36/75 (48%)
Frame = -2
Query: 622 NDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLA 443
ND++ D+L + ++ E ++ +N +R+ + ++ N+R+ ++
Sbjct: 19 NDLVRSSDELLNHRAIQESEQIETAADALITSNIGHRSRQRKKKTKK-ATNSRKPLSKFQ 77
Query: 442 NRMADIAQDVIAKPS 398
+ ++ +D I KPS
Sbjct: 78 SNTEEVNEDPILKPS 92
>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 336 CARKNDRWAAA*NDW 292
C RK++RW AA N W
Sbjct: 140 CRRKDNRWFAAINKW 154
>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 238
Score = 25.8 bits (54), Expect = 5.7
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -2
Query: 649 YAPAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCEN 470
YAP+V + I L + + A LA SL+LF + V +D ET + +
Sbjct: 146 YAPSVAKANEGLAKAIAGLAKYVAKAIQGLAHIILSLLLFILGLEVIEQDEETGDVEMSS 205
Query: 469 AR 464
R
Sbjct: 206 MR 207
>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 782
Score = 25.4 bits (53), Expect = 7.5
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 11/95 (11%)
Frame = -2
Query: 334 RPQKRSLGRSLKRLGSNDVIFSSDYVPNS-----MNVLNKVKEAIPRNKFKAKHNR---- 182
+P ++L + ++ + S++ +P S +N + ++E +P K K N
Sbjct: 166 KPFVQALKLTFEKTLGQPAVTSTEKIPVSETTRNVNSQHLMRERVPGEKILPKSNERNIL 225
Query: 181 ITLLEDYTRE--ELMNVIGSTMTDRQIARMNSLRN 83
IT Y L N++GST++ AR + RN
Sbjct: 226 ITSALPYVNNVPHLGNIVGSTLSADVFARYHRARN 260
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -2
Query: 535 LFANEMIVARRDAETARQDCE 473
+FANE+++ + DA++ +QD E
Sbjct: 556 IFANEILIEQADAQSFKQDEE 576
>SPBC365.02c |cox10||protoheme IX
farnesyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 402 GLAITSCAMSAMRLASCAVSRRAFSQS 482
GL+ + A M A C++S AF+QS
Sbjct: 114 GLSFNTLAWLTMGTALCSISANAFNQS 140
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,173
Number of Sequences: 5004
Number of extensions: 48537
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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