Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13c12
(190 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 27 1.4
U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical pr... 27 1.4
U49829-8|AAV28348.1| 515|Caenorhabditis elegans Hypothetical pr... 26 4.3
U49829-7|AAA93388.3| 513|Caenorhabditis elegans Hypothetical pr... 26 4.3
Z81498-3|CAB04084.3| 260|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical p... 25 5.6
Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical pr... 25 5.6
EF445112-1|ABQ01579.1| 265|Caenorhabditis elegans scramblase 4 ... 25 5.6
Z68341-3|CAA92766.2| 269|Caenorhabditis elegans Hypothetical pr... 25 7.5
U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily ass... 25 7.5
U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily ass... 25 7.5
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
F55H12.3 protein.
Length = 2972
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 95 TTTKKHCVNCGFTLTEI*XPCICSP 21
TT + C+ CGF L+ PCI P
Sbjct: 2651 TTGLRKCICCGFDLSTFGGPCIQCP 2675
>U97002-3|AAB52263.1| 1085|Caenorhabditis elegans Hypothetical
protein K09H11.3 protein.
Length = 1085
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 3 SSKNSKGRAYTRXLNLGQGKTTIHTMFFSRSM 98
S +N +G N G GK+TI TMF S +
Sbjct: 437 SHQNRRGNTNATPRNNGSGKSTISTMFESEQI 468
>U49829-8|AAV28348.1| 515|Caenorhabditis elegans Hypothetical
protein F27D9.8b protein.
Length = 515
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 132 SSIYFTFINNVSYYD*KTLCELWFYPDRDLKXV 34
S I F +S YD T +W Y RDL+ V
Sbjct: 416 SGIVFDIKQGISLYDIPTKSYIWQYRFRDLQAV 448
>U49829-7|AAA93388.3| 513|Caenorhabditis elegans Hypothetical
protein F27D9.8a protein.
Length = 513
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 132 SSIYFTFINNVSYYD*KTLCELWFYPDRDLKXV 34
S I F +S YD T +W Y RDL+ V
Sbjct: 416 SGIVFDIKQGISLYDIPTKSYIWQYRFRDLQAV 448
>Z81498-3|CAB04084.3| 260|Caenorhabditis elegans Hypothetical
protein F11A6.2 protein.
Length = 260
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 3/17 (17%)
Frame = -3
Query: 182 CCLWCCACV---QNGCV 141
CC CCACV Q+ CV
Sbjct: 107 CCYGCCACVGCCQHDCV 123
>Z46242-15|CAA86337.2| 2507|Caenorhabditis elegans Hypothetical
protein F10F2.1 protein.
Length = 2507
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 67 QFTQCFLVVV*NVIDKSKINRRKI 138
Q +CFL+ + N+ +SK NRR I
Sbjct: 940 QIKKCFLIDIINLCRESKENRRTI 963
>Z35598-8|CAA84657.2| 2507|Caenorhabditis elegans Hypothetical protein
F10F2.1 protein.
Length = 2507
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 67 QFTQCFLVVV*NVIDKSKINRRKI 138
Q +CFL+ + N+ +SK NRR I
Sbjct: 940 QIKKCFLIDIINLCRESKENRRTI 963
>EF445112-1|ABQ01579.1| 265|Caenorhabditis elegans scramblase 4
protein.
Length = 265
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 3/17 (17%)
Frame = -3
Query: 182 CCLWCCACV---QNGCV 141
CC CCACV Q+ CV
Sbjct: 107 CCYGCCACVGCCQHDCV 123
>Z68341-3|CAA92766.2| 269|Caenorhabditis elegans Hypothetical
protein F01G4.5 protein.
Length = 269
Score = 25.0 bits (52), Expect = 7.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 147 MCFDFSSIYFTFINNVSYYD*KTLCELWFY 58
M +DFS I+F N Y K LC L +Y
Sbjct: 131 MVYDFSQIFFLHFNCFDAYATK-LCYLCYY 159
>U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily
assigned gene nameprotein 137, isoform b protein.
Length = 1321
Score = 25.0 bits (52), Expect = 7.5
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -3
Query: 179 CLWCCACVQNGCV 141
C+WC CV + C+
Sbjct: 185 CIWCGCCVHDTCI 197
>U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily
assigned gene nameprotein 137, isoform a protein.
Length = 1372
Score = 25.0 bits (52), Expect = 7.5
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = -3
Query: 179 CLWCCACVQNGCV 141
C+WC CV + C+
Sbjct: 185 CIWCGCCVHDTCI 197
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,728,549
Number of Sequences: 27780
Number of extensions: 51163
Number of successful extensions: 178
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 231468760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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