Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c12
         (190 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   0.33 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   4.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    19   5.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    19   5.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   5.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    19   5.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    19   5.4  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    18   9.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    18   9.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    18   9.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    18   9.5  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 0.33
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -3

Query: 185 ACCLWCC 165
           +CC WCC
Sbjct: 10  SCCCWCC 16


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 123 YFTFINNVSYYD 88
           Y  F+N  +YYD
Sbjct: 134 YSAFVNLTAYYD 145


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 120 FTFINNVSYYD*KTLCELWFYPDRDLK 40
           + F+N + +YD   L + +F    D K
Sbjct: 130 YEFLNAIHHYDDIWLPDTYFIMHGDFK 156


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 120 FTFINNVSYYD*KTLCELWFYPDRDLK 40
           + F+N + +YD   L + +F    D K
Sbjct: 130 YEFLNAIHHYDDIWLPDTYFIMHGDFK 156


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 120 FTFINNVSYYD*KTLCELWFYPDRDLK 40
           + F+N + +YD   L + +F    D K
Sbjct: 181 YEFLNAIHHYDDIWLPDTYFIMHGDFK 207


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 120 FTFINNVSYYD*KTLCELWFYPDRDLK 40
           + F+N + +YD   L + +F    D K
Sbjct: 130 YEFLNAIHHYDDIWLPDTYFIMHGDFK 156


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 78  LCELWFYPDRDLKXVYMLSLC 16
           LC+ W   D  L    +LSLC
Sbjct: 110 LCDSWVSLDILLCTASILSLC 130


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 78  LCELWFYPDRDLKXVYMLSLC 16
           LC+LW   D       +L+LC
Sbjct: 108 LCKLWLTCDVLCCTASILNLC 128


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 78  LCELWFYPDRDLKXVYMLSLC 16
           LC+LW   D       +L+LC
Sbjct: 108 LCKLWLTCDVLCCTASILNLC 128


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 69  LWFYPDRDLKXVYMLSL 19
           LW Y D+ +  +YM+ L
Sbjct: 143 LWLYKDKTI--LYMVKL 157


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -2

Query: 78  LCELWFYPDRDLKXVYMLSLC 16
           LC+LW   D       +L+LC
Sbjct: 108 LCKLWLTCDVLCCTASILNLC 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,648
Number of Sequences: 438
Number of extensions: 543
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 42
effective length of database: 127,947
effective search space used:  2558940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)