Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c11
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    33   0.040
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.6  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    26   6.1  

>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 33.1 bits (72), Expect = 0.040
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
 Frame = -2

Query: 711 KEKYFRLPPSKRVNYIKLG-----INSPFICPW 628
           ++ + R PP+KRVNY K G     I +PF C W
Sbjct: 536 EDSWKRRPPAKRVNYQKFGDNFSEIGNPFCCDW 568


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 712 ERKILSSAT*QKSKLYKIRY*QPFYLPLGFI 620
           E+ I  +AT + S L+K+ + +PF L +GF+
Sbjct: 734 EQTISEAATDEISDLFKLIHSKPFLLEVGFL 764


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
 Frame = -2

Query: 378 HHEDPNEK--HRKQKRKEHLKEXXXXXXXXXXXXKQGHASNVTKRTNEPSEYVRNMRQL 208
           HH+ P +K  H+  K KEH K             K+ H     K    P + +++  +L
Sbjct: 382 HHKGPKDKEHHKGPKDKEHHKGPKDKEHHKGPKDKEHHQGPKEKHNERPEQNMQSSHEL 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,185
Number of Sequences: 5004
Number of extensions: 59101
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)