Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c11
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951...    30   2.1  
03_01_0279 - 2141327-2141437,2141667-2141789,2141869-2142057,214...    29   3.6  
11_05_0034 + 18507023-18507243,18507347-18507473,18508463-185085...    28   8.4  
02_05_0451 + 29123899-29123906,29124564-29124834,29125107-291252...    28   8.4  

>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
            9515765-9516102,9516191-9516329,9517083-9517152,
            9517201-9517307,9517387-9517437,9517549-9517660,
            9517783-9517869,9517958-9518133,9518479-9518586,
            9518654-9518812,9518888-9518971,9519053-9519258,
            9519565-9519666,9519768-9519877,9519963-9520114,
            9520380-9520548,9520841-9520878,9521963-9522571,
            9523314-9523784,9523786-9523871,9524396-9524906,
            9525388-9525412,9526001-9526051,9526228-9526301,
            9526412-9526534,9526667-9526738,9526924-9527020,
            9527174-9527283
          Length = 1649

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 273  HASNVTKRTNEPSEYVRNMRQLWLPS 196
            H +N  K T+   E +RNM+  WLPS
Sbjct: 1351 HGANSVKVTSFEEEALRNMKAFWLPS 1376


>03_01_0279 -
           2141327-2141437,2141667-2141789,2141869-2142057,
           2142270-2142989,2144857-2144931
          Length = 405

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 558 LNQIQDSIDRKKLMPEIENSNSCLIPVYLTLESRGNLKRHALICLPEVTDA 406
           L Q Q+     KL+P I+ + +   P Y    +  N+++ + I +PE TDA
Sbjct: 105 LEQEQNPDQDTKLLPSIDETFTA--PAYYPAATEANIEQFSQIMVPEHTDA 153


>11_05_0034 +
           18507023-18507243,18507347-18507473,18508463-18508531,
           18508620-18508763
          Length = 186

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
 Frame = -2

Query: 627 DLLLKDWCEEHIYDFFVLRNRQLLNQIQ-DSIDRKKLM------PEIENSNSCLIPVYLT 469
           DL+L  W E+HI+       R LL  +  ++ D  K +      PE  NSN    PV++ 
Sbjct: 88  DLVLGTWVEQHIHSMDEANIRALLQVLDLENPDLWKWLTSQEQPPEAVNSN----PVFIA 143

Query: 468 LESR--GNLKRHA 436
           ++S+   NL +H+
Sbjct: 144 VKSKVTDNLSKHS 156


>02_05_0451 +
           29123899-29123906,29124564-29124834,29125107-29125265,
           29125439-29125543
          Length = 180

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 168 TRQVLGYLSMGALSFS-EARSCGIGYVAYNALSELLKMGQNRVL 40
           TR   G   +G L    EAR CG+G V+  AL    KM  N  L
Sbjct: 15  TRDDAGTWRVGPLGVRMEARKCGVGVVSTYALPHEYKMRCNECL 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,858,129
Number of Sequences: 37544
Number of extensions: 318473
Number of successful extensions: 770
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)