Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c11
         (712 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D31765-1|BAA06543.1|  903|Homo sapiens KIAA0061 protein.               56   2e-07
BC011529-1|AAH11529.1| 1024|Homo sapiens processing of precursor...    56   2e-07

>D31765-1|BAA06543.1|  903|Homo sapiens KIAA0061 protein.
          Length = 903

 Score = 55.6 bits (128), Expect = 2e-07
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = -2

Query: 708 EKYFRLPPSKRVNYIKLGINSPFICPWDLLLKDW 607
           EKY R PP+KR NY+KLG  +PF CPW+ L +DW
Sbjct: 561 EKYKRRPPAKRPNYVKLGTLAPFCCPWEQLTQDW 594



 Score = 38.7 bits (86), Expect = 0.020
 Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 8/189 (4%)
 Frame = -2

Query: 546  QDSIDRKKLMPEIENSNSCLIPVYLTLESRGNLKRHALICLPEVTDASNIKTLFEPHHED 367
            Q  + R+  +  + +    L+ V L+L S+G+ + H +IC+P   D   +    + H+  
Sbjct: 716  QQGLTREACLSILGHFPRALVWVSLSLLSKGSPEPHTMICVPAKEDFLQLHE--DWHYCG 773

Query: 366  PNE-KHRKQKRKEHLKEXXXXXXXXXXXXKQGHASNVTKRTNEPSEYVRNMR-QLWLPSK 193
            P E KH    R + LK+            K G AS+      EP      +   LW    
Sbjct: 774  PQESKHSDPFRSKILKQ--KEKKKREKRQKPGRASSDGPAGEEPVAGQEALTLGLW-SGP 830

Query: 192  IDSVRFIGTRQVLGYLSMGALSFSEARSCG--IGYVAYNALSELLK----MGQNRVLVRN 31
            +  V    +R +LG+++ G   FS A  CG  +G+V+   L ++L       +  VL+R 
Sbjct: 831  LPRVTLHCSRTLLGFVTQG--DFSMAVGCGEALGFVSLTGLLDMLSSQPAAQRGLVLLRP 888

Query: 30   VSSRKYWLA 4
             +S +Y  A
Sbjct: 889  PASLQYRFA 897


>BC011529-1|AAH11529.1| 1024|Homo sapiens processing of precursor 1,
           ribonuclease P/MRP subunit (S. cerevisiae) protein.
          Length = 1024

 Score = 55.6 bits (128), Expect = 2e-07
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = -2

Query: 708 EKYFRLPPSKRVNYIKLGINSPFICPWDLLLKDW 607
           EKY R PP+KR NY+KLG  +PF CPW+ L +DW
Sbjct: 682 EKYKRRPPAKRPNYVKLGTLAPFCCPWEQLTQDW 715



 Score = 37.5 bits (83), Expect = 0.047
 Identities = 48/189 (25%), Positives = 83/189 (43%), Gaps = 8/189 (4%)
 Frame = -2

Query: 546  QDSIDRKKLMPEIENSNSCLIPVYLTLESRGNLKRHALICLPEVTDASNIKTLFEPHHED 367
            Q  + R+  +  + +    L+ V L+L S+G+ + H +IC+P   D   +    + H+  
Sbjct: 837  QQGLTREACLSILGHFPRALVWVSLSLLSKGSPEPHTMICVPAKEDFLQLHE--DWHYCG 894

Query: 366  PNE-KHRKQKRKEHLKEXXXXXXXXXXXXKQGHASNVTKRTNEPSEYVRNMR-QLWLPSK 193
            P E KH    R + LK+            K G AS+      EP      +   LW    
Sbjct: 895  PQESKHSDPFRSKILKQ--KEKKKREKRQKPGRASSDGPAGEEPVAGQEALTLGLW-SGP 951

Query: 192  IDSVRFIGTRQVLGYLSMGALSFSEARSCG--IGYVAYNALSELLK----MGQNRVLVRN 31
            +  V    +R +LG+++ G   FS A  CG  +G+V+   L +++       +  VL+R 
Sbjct: 952  LPRVTLHCSRTLLGFVTQG--DFSMAVGCGEALGFVSLTGLLDMVSSQPAAQRGLVLLRP 1009

Query: 30   VSSRKYWLA 4
             +S +Y  A
Sbjct: 1010 PASLQYRFA 1018


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,533,926
Number of Sequences: 237096
Number of extensions: 1824686
Number of successful extensions: 3066
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3064
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)