Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c11
         (712 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF132176-1|AAD34764.1|  797|Drosophila melanogaster unknown prot...   119   3e-27
AE014298-759|AAF46049.3|  857|Drosophila melanogaster CG32763-PA...   119   3e-27
AE014296-2884|AAF49360.1|  550|Drosophila melanogaster CG13724-P...    29   4.7  
AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran...    29   6.2  

>AF132176-1|AAD34764.1|  797|Drosophila melanogaster unknown protein.
          Length = 797

 Score =  119 bits (287), Expect = 3e-27
 Identities = 84/243 (34%), Positives = 119/243 (48%), Gaps = 26/243 (10%)
 Frame = -2

Query: 711  KEKYFRLPPSKRVNYIKLGINSPFICPWDLLLKDW-----CEEHIYDFFVLRNRQLLNQI 547
            + +YFR+PP+KR NY KL + SPF  PW  L++DW            F+VLR+RQ L +I
Sbjct: 514  RARYFRMPPNKRTNYRKLAVVSPFTAPWRHLVRDWRASFSSASEGSSFYVLRHRQQLEEI 573

Query: 546  QDSIDRKKLMPEIENSNSCLIPVYLTLESRGNLKRHALICLPEVTD----------ASNI 397
             +SI  +  +P+    +  +I + L L SRG++K +ALICLP   D              
Sbjct: 574  VESIRHRSPLPQ-TLPDDAIIQIQLQLLSRGHVKDNALICLPTAADHKKRWRQLKHNDQA 632

Query: 396  KTLFEPHHEDPNEKHRKQKRKEH---LKEXXXXXXXXXXXXKQGHASNVTKRTNEPSEYV 226
                EP   D NE+ RK+ R+ H   LK             ++     V  R    +  V
Sbjct: 633  PVHVEPTQPDLNEQLRKELRQSHKLKLKRLRSRRVREKRRLQETATKRVHIRPANTAHLV 692

Query: 225  R----NMRQLWLPSK----IDSVRFIGTRQVLGYLSMGALSFSEARSCGIGYVAYNALSE 70
            R     M +LWLP+      DSVR   +RQV GY+S    SF+EA  C +GYV    L +
Sbjct: 693  RGQLQEMCRLWLPTDPAELRDSVRRQCSRQVFGYVSTAGFSFTEALVCAVGYVTPAGLQQ 752

Query: 69   LLK 61
            L++
Sbjct: 753  LIE 755


>AE014298-759|AAF46049.3|  857|Drosophila melanogaster CG32763-PA
            protein.
          Length = 857

 Score =  119 bits (287), Expect = 3e-27
 Identities = 84/243 (34%), Positives = 119/243 (48%), Gaps = 26/243 (10%)
 Frame = -2

Query: 711  KEKYFRLPPSKRVNYIKLGINSPFICPWDLLLKDW-----CEEHIYDFFVLRNRQLLNQI 547
            + +YFR+PP+KR NY KL + SPF  PW  L++DW            F+VLR+RQ L +I
Sbjct: 574  RARYFRMPPNKRTNYRKLAVVSPFTAPWRHLVRDWRASFSSASEGSSFYVLRHRQQLEEI 633

Query: 546  QDSIDRKKLMPEIENSNSCLIPVYLTLESRGNLKRHALICLPEVTD----------ASNI 397
             +SI  +  +P+    +  +I + L L SRG++K +ALICLP   D              
Sbjct: 634  VESIRHRSPLPQ-TLPDDAIIQIQLQLLSRGHVKDNALICLPTAADHKKRWRQLKHNDQA 692

Query: 396  KTLFEPHHEDPNEKHRKQKRKEH---LKEXXXXXXXXXXXXKQGHASNVTKRTNEPSEYV 226
                EP   D NE+ RK+ R+ H   LK             ++     V  R    +  V
Sbjct: 693  PVHVEPTQPDLNEQLRKELRQSHKLKLKRLRSRRVREKRRLQETATKRVHIRPANTAHLV 752

Query: 225  R----NMRQLWLPSK----IDSVRFIGTRQVLGYLSMGALSFSEARSCGIGYVAYNALSE 70
            R     M +LWLP+      DSVR   +RQV GY+S    SF+EA  C +GYV    L +
Sbjct: 753  RGQLQEMCRLWLPTDPAELRDSVRRQCSRQVFGYVSTAGFSFTEALVCAVGYVTPAGLQQ 812

Query: 69   LLK 61
            L++
Sbjct: 813  LIE 815


>AE014296-2884|AAF49360.1|  550|Drosophila melanogaster CG13724-PA
           protein.
          Length = 550

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
 Frame = -2

Query: 234 EYVRNMRQLWLPSKIDSVRFIGTRQVLGYLSMGALSFSEARSCGIGYVAYNALSELLKMG 55
           EY+ ++ Q+  P     V+F+    VL   ++G   F+       G+  + ALS L+K  
Sbjct: 375 EYLSHVGQVLYPF----VKFVAFFTVLNPFTLGVFLFTLISPAVFGFFGFVALSVLVKPF 430

Query: 54  QNRV--LVRNVSS--RKYWLA 4
            + V  + RNV++  RK WLA
Sbjct: 431 LHLVFGVKRNVNAFDRKRWLA 451


>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 1088

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 477 YLTLESRGNLKRHALICLPEVTDASNIKTLFEPHHEDPNEK 355
           Y +  S+  L R  LI LPE+TD++ I+ +   +H + N +
Sbjct: 721 YFSAHSQFKLIR-CLIFLPEITDSTEIEKIITDYHYNSNHR 760


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,316,983
Number of Sequences: 53049
Number of extensions: 581804
Number of successful extensions: 1654
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1640
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3149551053
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)