Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c11
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-7|AAB53831.2|  752|Caenorhabditis elegans Hypothetical pr...    52   5e-07
U41991-3|AAA83343.2|  350|Caenorhabditis elegans Seven tm recept...    29   4.3  

>U00048-7|AAB53831.2|  752|Caenorhabditis elegans Hypothetical
           protein C05D11.9 protein.
          Length = 752

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 3/108 (2%)
 Frame = -2

Query: 708 EKYFRLPPSKRV-NYIKLGINSPFICPWDLLLKDW--CEEHIYDFFVLRNRQLLNQIQDS 538
           EKY   P ++R  ++  + +  PF   WD L +DW    +   + FV R+ Q L  I+++
Sbjct: 467 EKYLGKPHNRRCKHWSAVSVKYPFEFKWDELSQDWNLSNKPRSEAFVCRDLQKLRIIEEA 526

Query: 537 IDRKKLMPEIENSNSCLIPVYLTLESRGNLKRHALICLPEVTDASNIK 394
           + +   + E +     LIPV L    RG  K++ ++CLP   D  +I+
Sbjct: 527 MKKGSGLEEFQEPGM-LIPVKLQFFGRGRPKKYGMVCLPTDDDLISIR 573


>U41991-3|AAA83343.2|  350|Caenorhabditis elegans Seven tm receptor
           protein 220 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -1

Query: 97  ICGLQCPFRI---IKNGTKSSIGSQCLITQI 14
           ICG +C  RI   +KNG  SS  SQ L TQ+
Sbjct: 225 ICGYKCYLRIKLLLKNGGTSSARSQVLQTQL 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,569,557
Number of Sequences: 27780
Number of extensions: 319727
Number of successful extensions: 812
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)