Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c09
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    84   1e-17
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    29   0.49 
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    28   0.86 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   3.5  
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce...    25   4.6  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   4.6  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   4.6  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 83.8 bits (198), Expect = 1e-17
 Identities = 43/98 (43%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
 Frame = -3

Query: 318 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARD-KTKVAITADIPFS 142
           K+ ID T    D I DV  FEKYL + +KV+GKT NL + VVV+R+  +K+A+ A I FS
Sbjct: 11  KYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIAHIDFS 70

Query: 141 XXXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNI 28
                            RDWLRVV++    YELRY+N+
Sbjct: 71  GRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYYNV 108


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 148 RNVCGDSDFRLIPGDDNVIA*VICFALNFDVFLQVFLEVTY 270
           R + G+S F ++P     +   IC  L   V +++F++ T+
Sbjct: 300 RGLVGESSFAVLPNIPPALTFYICLGLQITVLIKLFIKPTW 340


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 27.9 bits (59), Expect = 0.86
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 334 LDAFAADFATLHSFFASLLMQLGFFS 411
           +D +  DFAT H+ + + L  +GF S
Sbjct: 87  IDLYILDFATQHNLYVASLRNMGFLS 112


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 318 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 208
           K   DC +  + ++  + N +K + +HV  E K + L
Sbjct: 819 KLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSEL 855


>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 202 SRCRRQG*DESRYHRRHSFFKEVPEVFNKTLPQEEQF 92
           SR R +  +  ++  R SF  +VPE +  TLP+   F
Sbjct: 135 SRKREKKTEIEKHLERISFLNKVPENWQVTLPETTDF 171


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -3

Query: 237  VKVEGKTNNLSNHVVVARDKTKVAITADIP 148
            +K+ G  NNL++++ +   +T++  + DIP
Sbjct: 1210 IKLVGMANNLNDNLELEEFRTRITNSMDIP 1239


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 273  DVGNFEKYLKEHVKVEGKTNNLSNH 199
            + GN +KY + ++KV GK ++   H
Sbjct: 955  EAGNLKKYDQPNLKVSGKNDSFVTH 979


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,680,728
Number of Sequences: 5004
Number of extensions: 27457
Number of successful extensions: 79
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)