Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c09
         (485 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0963 - 12769715-12769859,12770639-12770889                       92   2e-19
07_03_1662 + 28447419-28447666,28448429-28448573                       90   1e-18

>03_02_0963 - 12769715-12769859,12770639-12770889
          Length = 131

 Score = 92.3 bits (219), Expect = 2e-19
 Identities = 47/102 (46%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
 Frame = -3

Query: 324 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNLSNHVVVARDKTKVAITADIP 148
           ++ F IDC  P +D I+++ + EK+L+E +KV  GK  NL   V V+RDKTKV +T+D P
Sbjct: 21  SVTFVIDCAKPVDDKIMEIASLEKFLQERIKVAGGKAGNLGESVTVSRDKTKVTVTSDGP 80

Query: 147 FSXXXXXXXXXXXXXXXXXRDWLRVVASAHD--AYELRYFNI 28
           FS                 RDWLRV+AS  D   YELRYFNI
Sbjct: 81  FSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNI 122


>07_03_1662 + 28447419-28447666,28448429-28448573
          Length = 130

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 46/102 (45%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
 Frame = -3

Query: 324 NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVE-GKTNNLSNHVVVARDKTKVAITADIP 148
           ++ F IDC+ P ED I+++ + EK+L+E +KV  GK  NL + V V RDKTKV +T+D  
Sbjct: 20  SVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKTKVTVTSDGA 79

Query: 147 FSXXXXXXXXXXXXXXXXXRDWLRVVASAHD--AYELRYFNI 28
           FS                 RDWLRV+A+  D   YELRYFNI
Sbjct: 80  FSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNI 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,087,166
Number of Sequences: 37544
Number of extensions: 183051
Number of successful extensions: 441
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)