Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c09
         (485 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ989011-1|ABK97612.1|  467|Anopheles gambiae gustatory receptor...    24   3.2  
AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic acetylch...    23   7.3  
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    23   7.3  
DQ974174-1|ABJ52814.1|  391|Anopheles gambiae serpin 18 protein.       22   9.7  
AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic acetylch...    22   9.7  
AJ973473-1|CAJ01520.1|  127|Anopheles gambiae hypothetical prote...    22   9.7  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    22   9.7  
AF437891-1|AAL84186.1|  127|Anopheles gambiae sensory appendage ...    22   9.7  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    22   9.7  

>DQ989011-1|ABK97612.1|  467|Anopheles gambiae gustatory receptor 22
           protein.
          Length = 467

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 355 NPRQRHQAED*LKIYNRLH 299
           NP QR Q ED  +I  +LH
Sbjct: 19  NPNQRQQLEDRRRIKEQLH 37


>AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 8 protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -2

Query: 397 IASEDWQKRSE-GWQNPRQRHQAED*LKIYNRL 302
           +AS   Q RS  G  NP  +   +D L  YNRL
Sbjct: 12  VASSSAQGRSSHGRANPDAKRLYDDLLSNYNRL 44


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 50  TNCATSTSTLTSDNED 3
           TNC T T+TL   N D
Sbjct: 178 TNCGTRTTTLWRRNND 193


>DQ974174-1|ABJ52814.1|  391|Anopheles gambiae serpin 18 protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 288 EDSILDVGNFEKYL 247
           + ++L VGNF KY+
Sbjct: 372 DGNVLQVGNFSKYI 385


>AY705395-1|AAU12504.1|  569|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 2 protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 361 WQNPRQRHQAED*LKIYNRL 302
           W NP  +   +D L  YNRL
Sbjct: 31  WANPDAKRLYDDLLSNYNRL 50


>AJ973473-1|CAJ01520.1|  127|Anopheles gambiae hypothetical
          protein protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 81 LRVVASAHDAYELRYFNINADQ 16
          L    +A D Y  +Y NIN D+
Sbjct: 11 LVAAVAAQDKYTSKYDNINVDE 32


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 312 TIDCTHPAEDSILDVGNFEKY 250
           T++CT  +  SI+   NF K+
Sbjct: 503 TLECTSASGYSIVSTSNFNKH 523


>AF437891-1|AAL84186.1|  127|Anopheles gambiae sensory appendage
          protein protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 81 LRVVASAHDAYELRYFNINADQ 16
          L    +A D Y  +Y NIN D+
Sbjct: 11 LVAAVAAQDKYTSKYDNINVDE 32


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 119 QNVTSRRTICVTGFEWW 69
           QN++S R+I  T FE W
Sbjct: 214 QNISSSRSIEKTPFELW 230


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 433,523
Number of Sequences: 2352
Number of extensions: 7486
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 42708759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)