Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13c09
(485 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59357-1|CAA42007.1| 128|Homo sapiens Epstein-Barr virus small ... 111 2e-24
D17652-1|BAA04545.1| 128|Homo sapiens HBp15/L22 protein. 111 2e-24
CR456873-1|CAG33154.1| 128|Homo sapiens RPL22 protein. 111 2e-24
BC066314-1|AAH66314.1| 128|Homo sapiens ribosomal protein L22 p... 111 2e-24
BC058887-1|AAH58887.1| 128|Homo sapiens ribosomal protein L22 p... 111 2e-24
BC035566-1|AAH35566.1| 128|Homo sapiens ribosomal protein L22 p... 111 2e-24
AL031847-9|CAI19448.1| 128|Homo sapiens ribosomal protein L22 p... 111 2e-24
AF136171-1|AAP97261.1| 128|Homo sapiens heparin-binding protein... 111 2e-24
BC107708-1|AAI07709.1| 122|Homo sapiens RPL22L1 protein protein. 97 2e-20
BC062731-1|AAH62731.1| 132|Homo sapiens RPL22L1 protein protein. 97 2e-20
AB061849-1|BAB79487.1| 39|Homo sapiens ribosomal protein L22 p... 41 0.002
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ... 30 5.0
AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein. 30 5.0
>X59357-1|CAA42007.1| 128|Homo sapiens Epstein-Barr virus small RNA
associated protein protein.
Length = 128
Score = 111 bits (266), Expect = 2e-24
Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Frame = -3
Query: 321 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVV-VARDKTKVAITADIPF 145
LKFT+DCTHP ED I+D NFE++L+E +KV GK NL VV + R K+K+ +T+++PF
Sbjct: 19 LKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPF 78
Query: 144 SXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNINADQ 16
S RDWLRVVA++ ++YELRYF IN D+
Sbjct: 79 SKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDE 121
>D17652-1|BAA04545.1| 128|Homo sapiens HBp15/L22 protein.
Length = 128
Score = 111 bits (266), Expect = 2e-24
Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Frame = -3
Query: 321 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVV-VARDKTKVAITADIPF 145
LKFT+DCTHP ED I+D NFE++L+E +KV GK NL VV + R K+K+ +T+++PF
Sbjct: 19 LKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPF 78
Query: 144 SXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNINADQ 16
S RDWLRVVA++ ++YELRYF IN D+
Sbjct: 79 SKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDE 121
>CR456873-1|CAG33154.1| 128|Homo sapiens RPL22 protein.
Length = 128
Score = 111 bits (266), Expect = 2e-24
Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Frame = -3
Query: 321 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVV-VARDKTKVAITADIPF 145
LKFT+DCTHP ED I+D NFE++L+E +KV GK NL VV + R K+K+ +T+++PF
Sbjct: 19 LKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPF 78
Query: 144 SXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNINADQ 16
S RDWLRVVA++ ++YELRYF IN D+
Sbjct: 79 SKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDE 121
>BC066314-1|AAH66314.1| 128|Homo sapiens ribosomal protein L22
protein.
Length = 128
Score = 111 bits (266), Expect = 2e-24
Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Frame = -3
Query: 321 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVV-VARDKTKVAITADIPF 145
LKFT+DCTHP ED I+D NFE++L+E +KV GK NL VV + R K+K+ +T+++PF
Sbjct: 19 LKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPF 78
Query: 144 SXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNINADQ 16
S RDWLRVVA++ ++YELRYF IN D+
Sbjct: 79 SKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDE 121
>BC058887-1|AAH58887.1| 128|Homo sapiens ribosomal protein L22
protein.
Length = 128
Score = 111 bits (266), Expect = 2e-24
Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Frame = -3
Query: 321 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVV-VARDKTKVAITADIPF 145
LKFT+DCTHP ED I+D NFE++L+E +KV GK NL VV + R K+K+ +T+++PF
Sbjct: 19 LKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPF 78
Query: 144 SXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNINADQ 16
S RDWLRVVA++ ++YELRYF IN D+
Sbjct: 79 SKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDE 121
>BC035566-1|AAH35566.1| 128|Homo sapiens ribosomal protein L22
protein.
Length = 128
Score = 111 bits (266), Expect = 2e-24
Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Frame = -3
Query: 321 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVV-VARDKTKVAITADIPF 145
LKFT+DCTHP ED I+D NFE++L+E +KV GK NL VV + R K+K+ +T+++PF
Sbjct: 19 LKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPF 78
Query: 144 SXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNINADQ 16
S RDWLRVVA++ ++YELRYF IN D+
Sbjct: 79 SKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDE 121
>AL031847-9|CAI19448.1| 128|Homo sapiens ribosomal protein L22
protein.
Length = 128
Score = 111 bits (266), Expect = 2e-24
Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Frame = -3
Query: 321 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVV-VARDKTKVAITADIPF 145
LKFT+DCTHP ED I+D NFE++L+E +KV GK NL VV + R K+K+ +T+++PF
Sbjct: 19 LKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPF 78
Query: 144 SXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNINADQ 16
S RDWLRVVA++ ++YELRYF IN D+
Sbjct: 79 SKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDE 121
>AF136171-1|AAP97261.1| 128|Homo sapiens heparin-binding protein
HBp15 protein.
Length = 128
Score = 111 bits (266), Expect = 2e-24
Identities = 50/103 (48%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Frame = -3
Query: 321 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVV-VARDKTKVAITADIPF 145
LKFT+DCTHP ED I+D NFE++L+E +KV GK NL VV + R K+K+ +T+++PF
Sbjct: 19 LKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSKSKITVTSEVPF 78
Query: 144 SXXXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNINADQ 16
S RDWLRVVA++ ++YELRYF IN D+
Sbjct: 79 SKRYLKYLTKKYLKKNNLRDWLRVVANSKESYELRYFQINQDE 121
>BC107708-1|AAI07709.1| 122|Homo sapiens RPL22L1 protein protein.
Length = 122
Score = 97.5 bits (232), Expect = 2e-20
Identities = 47/101 (46%), Positives = 60/101 (59%)
Frame = -3
Query: 318 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPFSX 139
+F +D THP ED I D GNFE++L+E VKV GKT NL N V + R K K+ + ++ FS
Sbjct: 15 RFNLDLTHPVEDGIFDSGNFEQFLREKVKVNGKTGNLGNVVHIERFKNKITVVSEKQFSK 74
Query: 138 XXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNINADQ 16
RDWLRVVAS + YELRYF I+ D+
Sbjct: 75 RYLKYLTKKYLKKNNLRDWLRVVASDKETYELRYFQISQDE 115
>BC062731-1|AAH62731.1| 132|Homo sapiens RPL22L1 protein protein.
Length = 132
Score = 97.5 bits (232), Expect = 2e-20
Identities = 47/101 (46%), Positives = 60/101 (59%)
Frame = -3
Query: 318 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADIPFSX 139
+F +D THP ED I D GNFE++L+E VKV GKT NL N V + R K K+ + ++ FS
Sbjct: 25 RFNLDLTHPVEDGIFDSGNFEQFLREKVKVNGKTGNLGNVVHIERFKNKITVVSEKQFSK 84
Query: 138 XXXXXXXXXXXXXXXXRDWLRVVASAHDAYELRYFNINADQ 16
RDWLRVVAS + YELRYF I+ D+
Sbjct: 85 RYLKYLTKKYLKKNNLRDWLRVVASDKETYELRYFQISQDE 125
>AB061849-1|BAB79487.1| 39|Homo sapiens ribosomal protein L22
protein.
Length = 39
Score = 41.1 bits (92), Expect = 0.002
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = -3
Query: 321 LKFTIDCTHPAEDSILDVGNF 259
LKFT+DCTHP ED I+D NF
Sbjct: 19 LKFTLDCTHPVEDGIMDAANF 39
>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
marker CA125 protein.
Length = 22152
Score = 29.9 bits (64), Expect = 5.0
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -1
Query: 191 SPGIRRKSLSPQTFLFQRGT*SI*QNVTSRRTICVTGFEWWPPLMTLTNCATSTSTLTS 15
SPG+ R+ L + G + R ++ V GF W P+ T + TST L S
Sbjct: 15747 SPGVDREQLYWELSQLTNGIKELGPYTLDRNSLYVNGFTHWIPVPTSSTPGTSTVDLGS 15805
Score = 29.5 bits (63), Expect = 6.6
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -1
Query: 191 SPGIRRKSLSPQTFLFQRGT*SI*QNVTSRRTICVTGFEWWPPLMTLTNCATSTSTLTS 15
SPG+ R+ L + G + R ++ V GF W P+ T + TST L S
Sbjct: 12626 SPGLDREQLYWELSQLTNGIKELGPYTLDRNSLYVNGFTHWIPVPTSSTPGTSTVDLGS 12684
>AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein.
Length = 6995
Score = 29.9 bits (64), Expect = 5.0
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = -1
Query: 191 SPGIRRKSLSPQTFLFQRGT*SI*QNVTSRRTICVTGFEWWPPLMTLTNCATSTSTLTS 15
SPG+ R+ L + G + R ++ V GF W P+ T + TST L S
Sbjct: 4330 SPGVDREQLYWELSQLTNGIKELGPYTLDRNSLYVNGFTHWIPVPTSSTPGTSTVDLGS 4388
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,324,759
Number of Sequences: 237096
Number of extensions: 949728
Number of successful extensions: 1739
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1729
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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