Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c07
         (808 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK125897-1|BAC86336.1|  969|Homo sapiens protein ( Homo sapiens ...    31   3.7  
AK127855-1|BAC87163.1|  337|Homo sapiens protein ( Homo sapiens ...    31   6.5  

>AK125897-1|BAC86336.1|  969|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43909 fis, clone TESTI4010831. ).
          Length = 969

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 27/87 (31%), Positives = 35/87 (40%)
 Frame = -1

Query: 808 PRPTKGVHKEMRVKKEALYPSQRSFFRRNFPRWTPWGRSWPNE*RRVPPSASAQFPAGAG 629
           P P  G H+  RV+ +  YP  R       P  T W    P      PP+AS   P+   
Sbjct: 547 PGPVAGHHQMPRVQTQQYYPHVRI-----APTVTTWSNKTPTALPSHPPAAS---PSDT- 597

Query: 628 RTKSGSAPKWPGWRCLSYNIKPTAGGQ 548
               G  P  PG+  +  N+ P A GQ
Sbjct: 598 ---QGENPPPPGF-IMHGNVNPNAAGQ 620


>AK127855-1|BAC87163.1|  337|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45958 fis, clone PLACE7011559, highly  similar
           to Death-associated protein kinase 1 (EC 2.7.1.-). ).
          Length = 337

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 21/56 (37%), Positives = 25/56 (44%)
 Frame = -1

Query: 742 RSFFRRNFPRWTPWGRSWPNE*RRVPPSASAQFPAGAGRTKSGSAPKWPGWRCLSY 575
           RSFFRR  PR +    S      R PPS  A  P G        +P   G+R LS+
Sbjct: 267 RSFFRRRRPRLSSTNSS------RFPPSPLASKPTGRNLHAGPVSPAGVGFRTLSF 316


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,746,692
Number of Sequences: 237096
Number of extensions: 2558870
Number of successful extensions: 8184
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8184
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9980595722
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)