Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c06
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    30   0.33 
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         27   3.1  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   4.0  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    27   4.0  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    25   9.4  

>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 303 FPQNHLRVHHHLLYQWRMLQLSIRRTWEELPISTRPIQTASIPL 172
           FP++  + H+     W +LQ S  + WE+L +ST  + T  + L
Sbjct: 557 FPRSSGKEHYQKA--WALLQTSRAKVWEKLGLSTVDVSTTDVRL 598


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 567 NHKLSRLHRRTAVLKLWIHQYFYHTHRLT 481
           N+ LS LH       L++ + +YHTH LT
Sbjct: 57  NYALSILHNICLASFLYLSKCYYHTHILT 85


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -2

Query: 526 EIMDPSIFLP--YAPPNGLPQESKLVTYMSRSTSTP--TRSLNHAIGKLTLDSSPP 371
           E  D  I LP     P      S+   +  R  + P  T +L+H  GKL +DS PP
Sbjct: 119 EARDQGITLPSYMRHPRLFDLSSEYAKWQIRMGAVPPYTITLSHIFGKLDVDSLPP 174


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 92  GIPM*ASLLRMILVSICRNKIILFGLV 12
           GIP+   L + ++  + RNK+ LFG++
Sbjct: 528 GIPLRCRLKQQLIKFVWRNKVFLFGIL 554


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = -2

Query: 259 MANASTVHQENVGGTTYFYSTNSDSLNTTSGLNSSASM 146
           M+++S  H  +V  ++  Y ++S    TTSGL+SSAS+
Sbjct: 139 MSSSSLSHSSSVPSSSSSYHSSS---MTTSGLSSSASI 173


>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 492 AYGRNIDGSIISKLQCVCAVCLIYDSFRF 578
           A   ++D  I+SKL  +  + L YD+ RF
Sbjct: 28  AIQEHMDSMILSKLPRINGIVLAYDNIRF 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,393,674
Number of Sequences: 5004
Number of extensions: 72109
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)