Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c06
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0920 - 33009183-33009335,33009421-33009741,33010221-330103...    35   0.085
04_03_0589 - 17604361-17604800,17604887-17604949,17605025-176052...    29   3.2  
04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,572...    29   4.2  
02_01_0522 + 3779404-3779439,3779594-3779709,3780120-3780327,378...    29   5.6  
07_01_0352 - 2550656-2550659,2550660-2551195                           28   9.7  
03_06_0742 + 35900505-35900519,35901230-35901281,35901647-359017...    28   9.7  

>01_06_0920 -
           33009183-33009335,33009421-33009741,33010221-33010343,
           33010476-33010634,33010720-33011086,33011162-33011315,
           33011782-33012874
          Length = 789

 Score = 34.7 bits (76), Expect = 0.085
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 62  CVKGLLTWVYQWIWSCGAQQRVVHARFFHGSR*IKTASGIEAV*IGRVEIGSSSH 226
           C++  L W++ W+   G     V     H +R I  A+  E + IGR E+   ++
Sbjct: 554 CLEAYLLWLFGWVMFYGGHGHAVDKGLVHYARSIADAAAAERIAIGRPEVDQHAY 608


>04_03_0589 -
           17604361-17604800,17604887-17604949,17605025-17605280,
           17605373-17605634,17605739-17605885,17606118-17606236,
           17606373-17606531,17606911-17606947,17607023-17607174
          Length = 544

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 62  CVKGLLTWVYQWIWSCGAQQRVVHARFFHGSR*IKTAS 175
           C++  L W++ W+  CG     V     H +R I  A+
Sbjct: 79  CLEAYLLWLFGWVMFCGGHGHAVDKGLVHYARSIADAA 116


>04_01_0438 -
           5723451-5723759,5723795-5723863,5724025-5724210,
           5724297-5724558,5724662-5724960,5725040-5725453,
           5725533-5725899,5726002-5726146,5726562-5727558
          Length = 1015

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 62  CVKGLLTWVYQWIWSCGAQQRVVHARFFHGSR*IKTAS 175
           C++  L W++ W+  CG+    V     H +R I  A+
Sbjct: 519 CLEAYLLWLFGWVMFCGSHGHSVDRGLVHYARSIADAA 556


>02_01_0522 +
           3779404-3779439,3779594-3779709,3780120-3780327,
           3781446-3781611,3781713-3781842,3782496-3782619,
           3782794-3782844,3783140-3783262,3783504-3783602,
           3783680-3783790,3783868-3783957,3784035-3784175,
           3787913-3788116,3788154-3788290,3788429-3788662,
           3789535-3789829,3789963-3790017,3790144-3790245,
           3790581-3790669,3790807-3790899
          Length = 867

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
 Frame = -3

Query: 330 TTMFRHRICFPQNHLRV----HHHLLYQWRMLQLSIRRTWEE---LPISTRPIQTASIPL 172
           +TM  H I   Q   ++    HH LL  +  L   IR TW+E   L +  R + +++  L
Sbjct: 642 STMLDHFINILQKDFKIGYIQHHPLLQDFNQLSNMIRMTWKESKYLTVERRVLLSST--L 699

Query: 171 AVLIHRLPW 145
             + + +PW
Sbjct: 700 NAIRNNIPW 708


>07_01_0352 - 2550656-2550659,2550660-2551195
          Length = 179

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -2

Query: 478 LPQESKLVTYMSRSTSTPTRSLNHAIGKLTLDSSPPGVKKVLVSEFIP 335
           LPQE +  +++S   S P   L    GK  L S  PG+  +    F P
Sbjct: 29  LPQEEEYESFVSSLPSNPKLQLLRYQGKWLLQSWVPGIIAIQRGGFAP 76


>03_06_0742 +
           35900505-35900519,35901230-35901281,35901647-35901772,
           35902303-35902613,35902745-35902988,35903726-35903976,
           35904071-35904277,35904546-35904713,35904798-35905127,
           35905266-35905400
          Length = 612

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 439 STSTPTRSLNHAIGKLT--LDSSPPGVKKVLVSEFIP 335
           S+S PT+    A   L   LD +PPG +++L  +F P
Sbjct: 361 SSSQPTKEQQEAADNLVKMLDLAPPGREEILKPDFTP 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,312,649
Number of Sequences: 37544
Number of extensions: 450301
Number of successful extensions: 1018
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)