Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13c06
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81537-9|CAB04376.2|  673|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z81537-5|CAB04381.2|  673|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z81015-3|CAB02656.1|  266|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>Z81537-9|CAB04376.2|  673|Caenorhabditis elegans Hypothetical
           protein F41D3.10 protein.
          Length = 673

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 568 LFDSQLFMTMRVPQHVVIKGSISTRHIWK 654
           +FD+  +  +  P+H+  +G    RH+WK
Sbjct: 639 IFDNSGYSYLTTPKHLTPRGLEHVRHVWK 667


>Z81537-5|CAB04381.2|  673|Caenorhabditis elegans Hypothetical
           protein F41D3.5 protein.
          Length = 673

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 568 LFDSQLFMTMRVPQHVVIKGSISTRHIWK 654
           +FD+  +  +  P+H+  +G    RH+WK
Sbjct: 639 IFDNSGYSYLTTPKHLTPRGLEHVRHVWK 667


>Z81015-3|CAB02656.1|  266|Caenorhabditis elegans Hypothetical
           protein C11E4.4 protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = +3

Query: 432 EVERLMYVTSFDSCGSPLGGAYGRNIDGSIISKLQCVCAVCLIYDSFRFTVIHDNESTPT 611
           E  + +Y TS     S +GG +G  +  SII+ +Q V  +   + +F F   H     P 
Sbjct: 67  EYVKEIYTTSIPGFMSQIGGQFGFFLGLSIITLIQMV--LYGFHSAFMFAKKHIQRKFPF 124

Query: 612 CR 617
           C+
Sbjct: 125 CK 126


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 559 IKQTAQTHC--SFEIMDPSIFLPYAPPNGLPQESK 461
           I+++  T C  S  I+ PS+F+P A P  +P++ K
Sbjct: 710 IQESKNTPCPVSQPILIPSVFVPVAVPEPIPEKPK 744


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,533,856
Number of Sequences: 27780
Number of extensions: 399865
Number of successful extensions: 965
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)