Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13b22
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    89   6e-19
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   3.8  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   8.8  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 89.0 bits (211), Expect = 6e-19
 Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 5/146 (3%)
 Frame = -3

Query: 488 RFLLEGQIIELI*TIIPAFTLIFIAXXXXXXXXXXXXXXXXLITLKSIGHQ*Y*RYEYSD 309
           ++   G I+E I T+IPA  LI +A                 +T+K+IG Q +  YE +D
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEVQKPSMTVKAIGRQWFWSYELND 128

Query: 308 F-----NNIEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXXXXXXITATDVIHS*TIPS 144
           F       + FDSY++P  +++    R L+VD              +T+ DVIHS  +PS
Sbjct: 129 FVTNENEPVSFDSYMVPEEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVIHSWAVPS 188

Query: 143 LGVKVDANPGRLNQTNFFINRSWNFF 66
           LG+K D  P RLNQ +  I+R   F+
Sbjct: 189 LGIKCDCIPSRLNQVSLSIDREGLFY 214



 Score = 34.3 bits (75), Expect = 0.019
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -2

Query: 69  FFGQCSEICGANHSFIPXVMK 7
           F+GQCSE+CG  HS +P V++
Sbjct: 213 FYGQCSELCGVLHSSMPIVVQ 233


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 666 GISLFFRNGNMIKFKSTKWSFTF 598
           G+S FF  GN     S  W+F F
Sbjct: 777 GLSHFFTTGNQAAISSLDWNFAF 799


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 202 LFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLKSE 315
           LF+    R +T  SRN+L+FI LD     SN   + SE
Sbjct: 165 LFVRHWDRWNTG-SRNTLYFIELDKKTENSNYFEISSE 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,416,149
Number of Sequences: 5004
Number of extensions: 40692
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)