Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13b20
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   324   1e-89
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   324   1e-89
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.78 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.2  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.2  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   5.5  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   7.3  
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    25   9.6  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   9.6  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  324 bits (795), Expect = 1e-89
 Identities = 152/252 (60%), Positives = 189/252 (75%)
 Frame = -3

Query: 806 KSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEK 627
           +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+MEIQ+NGG++ DKV+WAREH EK
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201

Query: 626 PIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS 447
            + + S F Q+EMID I           T+RW TK+LPRKTH+GLRKVACIGAWHP+ V 
Sbjct: 202 TVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQ 261

Query: 446 FTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHY 267
           +TVARAG  GY HRT++N KIYRIG G    D K    NAST++D +EK ITPMGGF  Y
Sbjct: 262 WTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRY 314

Query: 266 GEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPA 87
           G V NDFVM+ G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA
Sbjct: 315 GVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPA 374

Query: 86  DKAAFMGTLKKD 51
           +   F+GTLKKD
Sbjct: 375 EAKQFLGTLKKD 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  324 bits (795), Expect = 1e-89
 Identities = 152/252 (60%), Positives = 189/252 (75%)
 Frame = -3

Query: 806 KSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAREHLEK 627
           +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+MEIQ+NGG++ DKV+WAREH EK
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201

Query: 626 PIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVS 447
            + + S F Q+EMID I           T+RW TK+LPRKTH+GLRKVACIGAWHP+ V 
Sbjct: 202 TVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGAWHPANVQ 261

Query: 446 FTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHY 267
           +TVARAG  GY HRT++N KIYRIG G    D K    NAST++D +EK ITPMGGF  Y
Sbjct: 262 WTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRY 314

Query: 266 GEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPA 87
           G V NDFVM+ G   GP KR++TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA
Sbjct: 315 GVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPA 374

Query: 86  DKAAFMGTLKKD 51
           +   F+GTLKKD
Sbjct: 375 EAKQFLGTLKKD 386


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.78
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 342 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 440
           NFA+L+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 309 QVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 431
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 72  HGYTQEGSYSRRSCGYHNPS 13
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 767 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 657
           C+VV  +  T M+   QRQ K  I +  LNG  +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 294 NGFLRQVILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 422
           N FL  +  SRC V  N+ I + V S    ++F++     M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 695 MEIQLNGGTIEDKVKWAREH 636
           M +Q  G TI    KW REH
Sbjct: 46  MPVQYKGQTISASHKWTREH 65


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 354 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 479
           LF+D LS   D L+H   ++ +    T  S  H      SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,441,537
Number of Sequences: 5004
Number of extensions: 73158
Number of successful extensions: 200
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)