Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13b17
         (685 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-3757|AAG22453.3|  237|Drosophila melanogaster CG17521-P...   414   e-116
AE014296-3758|AAF45440.2|  231|Drosophila melanogaster CG17521-P...   412   e-115
U49721-1|AAC16108.1|  218|Drosophila melanogaster QM homolog pro...   411   e-115
AY070910-1|AAL48532.1|  218|Drosophila melanogaster RE02339p pro...   411   e-115
BT003580-1|AAO39584.1|  197|Drosophila melanogaster LD24589p pro...   199   2e-51
BT011380-1|AAR96172.1| 1233|Drosophila melanogaster LP07472p pro...    30   3.4  
AY047535-1|AAK77267.1|  640|Drosophila melanogaster GH04440p pro...    30   3.4  
AE013599-782|AAF58990.2| 1233|Drosophila melanogaster CG8777-PA ...    30   3.4  
AE014296-3425|AAF51645.2|  926|Drosophila melanogaster CG3680-PA...    29   7.8  
AE013599-129|AAF57296.3|  499|Drosophila melanogaster CG14471-PA...    29   7.8  
AE013599-128|AAM68338.1| 1209|Drosophila melanogaster CG14471-PB...    29   7.8  

>AE014296-3757|AAG22453.3|  237|Drosophila melanogaster CG17521-PB,
           isoform B protein.
          Length = 237

 Score =  414 bits (1019), Expect = e-116
 Identities = 191/217 (88%), Positives = 203/217 (93%), Gaps = 3/217 (1%)
 Frame = -3

Query: 683 FSRL--WCHFVK-ITMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDD 513
           FSR+  W   V  + MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLG+K+ATV+D
Sbjct: 5   FSRVLRWKRLVSGVEMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVED 64

Query: 512 FPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 333
           FPLCVHLVSDEYEQLSSEALEAGRICCNKYLVK CGKDQFHIRMRLHPFHVIRINKMLSC
Sbjct: 65  FPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSC 124

Query: 332 AGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKI 153
           AGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDR+KAQVIEALRRAKFKFPGRQKI
Sbjct: 125 AGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKI 184

Query: 152 YVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPE 42
           YVSKKWGFTKYER+ +E+LR++ RL  DGC V+YRPE
Sbjct: 185 YVSKKWGFTKYERERYEELRDDNRLEPDGCNVKYRPE 221


>AE014296-3758|AAF45440.2|  231|Drosophila melanogaster CG17521-PA,
           isoform A protein.
          Length = 231

 Score =  412 bits (1015), Expect = e-115
 Identities = 186/204 (91%), Positives = 197/204 (96%)
 Frame = -3

Query: 653 ITMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYE 474
           + MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLG+K+ATV+DFPLCVHLVSDEYE
Sbjct: 12  VEMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYE 71

Query: 473 QLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGA 294
           QLSSEALEAGRICCNKYLVK CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGA
Sbjct: 72  QLSSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGA 131

Query: 293 FGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYER 114
           FGKPQGTVARVRIGQPIMSVRSSDR+KAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYER
Sbjct: 132 FGKPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYER 191

Query: 113 DEFEKLREEGRLANDGCIVQYRPE 42
           + +E+LR++ RL  DGC V+YRPE
Sbjct: 192 ERYEELRDDNRLEPDGCNVKYRPE 215


>U49721-1|AAC16108.1|  218|Drosophila melanogaster QM homolog
           protein.
          Length = 218

 Score =  411 bits (1013), Expect = e-115
 Identities = 186/202 (92%), Positives = 196/202 (97%)
 Frame = -3

Query: 647 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 468
           MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLG+K+ATV+DFPLCVHLVSDEYEQL
Sbjct: 1   MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQL 60

Query: 467 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 288
           SSEALEAGRICCNKYLVK CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120

Query: 287 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 108
           KPQGTVARVRIGQPIMSVRSSDR+KAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYER+ 
Sbjct: 121 KPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERER 180

Query: 107 FEKLREEGRLANDGCIVQYRPE 42
           +E+LR++ RL  DGC V+YRPE
Sbjct: 181 YEELRDDNRLEPDGCNVKYRPE 202


>AY070910-1|AAL48532.1|  218|Drosophila melanogaster RE02339p
           protein.
          Length = 218

 Score =  411 bits (1013), Expect = e-115
 Identities = 186/202 (92%), Positives = 196/202 (97%)
 Frame = -3

Query: 647 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 468
           MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLG+K+ATV+DFPLCVHLVSDEYEQL
Sbjct: 1   MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCVHLVSDEYEQL 60

Query: 467 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 288
           SSEALEAGRICCNKYLVK CGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG
Sbjct: 61  SSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 120

Query: 287 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDE 108
           KPQGTVARVRIGQPIMSVRSSDR+KAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYER+ 
Sbjct: 121 KPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERER 180

Query: 107 FEKLREEGRLANDGCIVQYRPE 42
           +E+LR++ RL  DGC V+YRPE
Sbjct: 181 YEELRDDNRLEPDGCNVKYRPE 202


>BT003580-1|AAO39584.1|  197|Drosophila melanogaster LD24589p
           protein.
          Length = 197

 Score =  199 bits (486), Expect = 2e-51
 Identities = 118/206 (57%), Positives = 135/206 (65%), Gaps = 2/206 (0%)
 Frame = -3

Query: 653 ITMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYE 474
           + MGRRPARCYRY           C+  P PK R F  G     +  F L          
Sbjct: 5   VEMGRRPARCYRY-----------CKNKPYPKSR-FCRGVPDPKIRIFDL---------- 42

Query: 473 QLSSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRI--NKMLSCAGADRLQTGMR 300
                 +E   +C   +LV     D++  ++        RI  NKMLSCAGADRLQTGMR
Sbjct: 43  GRKKATVEDFPLCV--HLVS----DEYE-QLSSEALEAGRICCNKMLSCAGADRLQTGMR 95

Query: 299 GAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKY 120
           GAFGKPQGTVARVRIGQPIMSVRSSDR+KAQVIEALRRAKFKFPGRQKIYVSKKWGFTKY
Sbjct: 96  GAFGKPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKY 155

Query: 119 ERDEFEKLREEGRLANDGCIVQYRPE 42
           ER+ +E+LR++ RL  DGC V+YRPE
Sbjct: 156 ERERYEELRDDNRLEPDGCNVKYRPE 181


>BT011380-1|AAR96172.1| 1233|Drosophila melanogaster LP07472p protein.
          Length = 1233

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 680  SRLWCHFVKITMGRRPARCYRYCKNKPYPKSRFCRGV 570
            S L  H++ I  G R A CY   + + +P SR  R V
Sbjct: 1107 SYLTAHYILINEGARRALCYLQTRIRMFPNSRSLRSV 1143


>AY047535-1|AAK77267.1|  640|Drosophila melanogaster GH04440p
           protein.
          Length = 640

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 680 SRLWCHFVKITMGRRPARCYRYCKNKPYPKSRFCRGV 570
           S L  H++ I  G R A CY   + + +P SR  R V
Sbjct: 514 SYLTAHYILINEGARRALCYLQTRIRMFPNSRSLRSV 550


>AE013599-782|AAF58990.2| 1233|Drosophila melanogaster CG8777-PA
            protein.
          Length = 1233

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 680  SRLWCHFVKITMGRRPARCYRYCKNKPYPKSRFCRGV 570
            S L  H++ I  G R A CY   + + +P SR  R V
Sbjct: 1107 SYLTAHYILINEGARRALCYLQTRIRMFPNSRSLRSV 1143


>AE014296-3425|AAF51645.2|  926|Drosophila melanogaster CG3680-PA
           protein.
          Length = 926

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 449 PPKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQVHPDRTS 589
           PPK  S+    +RTP+         + S+   R   SWD V+  R S
Sbjct: 544 PPKKESAQSAAKRTPADSVFTKATANTSARKPRASDSWDYVYKQRAS 590


>AE013599-129|AAF57296.3|  499|Drosophila melanogaster CG14471-PA,
           isoform A protein.
          Length = 499

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = -1

Query: 238 PCALVTGGRHRSSRLCAVPS-SSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASPMTAV 62
           P  LV GGR  SS    +PS SS+P+ K +   R  V       SL     R+ S     
Sbjct: 297 PACLVGGGREVSSIPMPIPSPSSNPNSKPTPANRPIVGS--EAFSLLPTTARSTSLTETA 354

Query: 61  LCSTARXHGPLDA 23
           L  TA    PL A
Sbjct: 355 LAKTAATVLPLYA 367


>AE013599-128|AAM68338.1| 1209|Drosophila melanogaster CG14471-PB,
           isoform B protein.
          Length = 1209

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 26/73 (35%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = -1

Query: 238 PCALVTGGRHRSSRLCAVPS-SSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASPMTAV 62
           P  LV GGR  SS    +PS SS+P+ K +   R  V       SL     R+ S     
Sbjct: 297 PACLVGGGREVSSIPMPIPSPSSNPNSKPTPANRPIVGS--EAFSLLPTTARSTSLTETA 354

Query: 61  LCSTARXHGPLDA 23
           L  TA    PL A
Sbjct: 355 LAKTAATVLPLYA 367


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,891,827
Number of Sequences: 53049
Number of extensions: 838894
Number of successful extensions: 2615
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2614
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)