Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13b13
         (671 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50191-8|AAK31551.3|  296|Caenorhabditis elegans Hypothetical pr...    33   0.24 
Z19154-8|CAE17741.1|  335|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF101316-1|AAC69231.1|  684|Caenorhabditis elegans Hypothetical ...    28   5.3  
U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF067619-1|AAC17568.2|  368|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U50191-8|AAK31551.3|  296|Caenorhabditis elegans Hypothetical
           protein T14B4.3 protein.
          Length = 296

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +3

Query: 267 AVGFAQFAHLSFGQRPRVGVDQAHNHAVDFESQHAIVLYSFSGRYTFEYNKHGFKFLD 440
           +V    F   +FG    VG  QA      F+   A+++    G   F+Y+ H F F D
Sbjct: 38  SVSLLNFNKNAFGLGAAVGAHQAIGDEKLFQKPKALLIIVIDGLENFDYDGHAFNFTD 95


>Z19154-8|CAE17741.1|  335|Caenorhabditis elegans Hypothetical
           protein C40H1.9 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -2

Query: 292 CANCANPTALWCTRKTRQLSKFY---WKITLPLLMLTKPPI 179
           C+NC     +WC  +++  S F     KI+L L   TKP +
Sbjct: 25  CSNCVGSGQVWCVEQSQCNSSFVSCSTKISLQLNCPTKPKV 65


>AF101316-1|AAC69231.1|  684|Caenorhabditis elegans Hypothetical
           protein F52F10.3 protein.
          Length = 684

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 137 KKSLFIYYLLTYKIWYTSVQIVSVQRH 57
           +K++FI  +LT+ +W  +  I+SV+ H
Sbjct: 207 EKNIFIKIILTFSLWTNAELILSVKEH 233


>U50068-6|AAB37736.2| 1079|Caenorhabditis elegans Hypothetical
           protein C01G5.4 protein.
          Length = 1079

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 491 ASTSSNVTMTRGTANFD--IKEFKSMFIVFKGIT 396
           A+TS+NVT  + T NFD  +K    +  V  GIT
Sbjct: 133 ATTSTNVTNAKSTTNFDGYLKHISVIAHVANGIT 166


>AF067619-1|AAC17568.2|  368|Caenorhabditis elegans Hypothetical
           protein K03E5.3 protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +1

Query: 466 MVTLLDVLAAFGDLTP*SYTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIW--LNLLSPC 639
           +VTL D++ A   L      + R +  +  +LEP  T S +   +   ++W  L+ LS C
Sbjct: 104 IVTLFDIIYANSKLYMVFEFIDRDLKNLLEMLEP--TNSVLPPNYVKSFMWQLLSALSYC 161

Query: 640 AMRKLAH 660
            +R++ H
Sbjct: 162 HLRRIVH 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,521,955
Number of Sequences: 27780
Number of extensions: 333914
Number of successful extensions: 986
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)