Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13b12
         (816 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    25   0.63 
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    25   0.63 
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    25   0.63 
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    25   0.63 
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   2.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.9  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -1

Query: 810 NTHSFKYRYVHNDTNAKFYNVIDFLQR 730
           + +++KY Y +N+ N K Y  I+++++
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQ 117


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -1

Query: 810 NTHSFKYRYVHNDTNAKFYNVIDFLQR 730
           + +++KY Y +N+ N K Y  I+++++
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQ 117


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -1

Query: 810 NTHSFKYRYVHNDTNAKFYNVIDFLQR 730
           + +++KY Y +N+ N K Y  I+++++
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQ 117


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -1

Query: 810 NTHSFKYRYVHNDTNAKFYNVIDFLQR 730
           + +++KY Y +N+ N K Y  I+++++
Sbjct: 91  HNNNYKYNYNNNNYNKKLYYNINYIEQ 117


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 15/72 (20%), Positives = 30/72 (41%)
 Frame = -2

Query: 509 DDLRDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNELDAKLNMLQSAE 330
           DD+   +E   + + +     E  +       ND      +F++ LN+ D  +++  S  
Sbjct: 36  DDIDSLLEDESERMLRKRGCIEACLFHRLALMNDNVFDVSKFDVYLNDTDMDMDLKDSIR 95

Query: 329 KLKTAIVTESKN 294
           K+    V  +KN
Sbjct: 96  KIIRQCVDNAKN 107


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 680 QVYHLNEIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSNALLHL 528
           Q YH+  + F KQK  ++   L       +  L  LM   F NKS  ++ +
Sbjct: 9   QHYHITPV-FTKQKKVKEDTELNLQTIFNEDKLDNLMDKQFKNKSLPVIEI 58


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/22 (36%), Positives = 9/22 (40%)
 Frame = +3

Query: 744 LLHCRILRSCRCARICT*NCAC 809
           L HC    +C C   C   C C
Sbjct: 746 LCHCCDFDACDCEMTCPAGCKC 767


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -2

Query: 500 RDKIESVLKHVKKLNTNSEKFMVTHETFKNDVGNRFEQFELRLNE 366
           RD+I   +     +NT  E+  +T +   + +GN  E   L  N+
Sbjct: 314 RDRIYEAIHTGSVINTRGERIQLTEKNGIDVLGNIMEASILSPNQ 358


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 793  VQIRAQRHERKILQCNRFFAKVLKLRTTTYLIAI 692
            VQI+   H+++  Q  +  AKVL    +  LI++
Sbjct: 1096 VQIQQSPHQQQQQQQQKILAKVLTSSNSGQLISV 1129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,620
Number of Sequences: 438
Number of extensions: 4629
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)