Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13b11
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1129 + 34732007-34732091,34732814-34732934,34733012-347330...    32   0.36 
02_04_0609 + 24312528-24313352                                         31   0.84 
07_01_0307 - 2194796-2199274                                           28   5.9  
07_01_0159 - 1116786-1117153,1117251-1119936                           28   5.9  
02_04_0123 + 19961904-19962096,19962836-19963029,19963334-199634...    28   7.8  

>01_06_1129 +
           34732007-34732091,34732814-34732934,34733012-34733083,
           34733168-34733242,34733348-34733419,34733514-34733675,
           34733780-34733854,34733932-34734003,34734089-34734160,
           34734245-34734313,34734388-34734462,34734557-34734628,
           34734732-34734866,34734946-34735415,34735490-34735648,
           34735741-34735880,34735974-34736193,34736305-34736540,
           34736627-34737130
          Length = 961

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
 Frame = +1

Query: 307 SGPVLGSIKH-TIMLSTSNRNMPLSSTV--LVGVIPLNTINMDLNSLISKFAVPRVMVTL 477
           SGPV GSI + + ++  S  +  L+ TV  L     L  +++  N+ +S  A PR   TL
Sbjct: 253 SGPVPGSIANLSRLMELSLASNQLNGTVPDLTSANALTYVDLSNNNFMSSPA-PRWFSTL 311

Query: 478 LDVLAAFGDLTP*SYTVPRKMLLVPTLLEPSLTMSS 585
             +   F D    + T+P  +   P L + SL  +S
Sbjct: 312 TSLTTLFMDSDHLTGTIPSALFSFPQLQQISLAKNS 347


>02_04_0609 + 24312528-24313352
          Length = 274

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 8/105 (7%)
 Frame = +1

Query: 307 SGPVLGSIKHTIMLSTSNRNMPLSSTVLVGVIPLNT--------INMDLNSLISKFAVPR 462
           S  + G+I  ++  S+S   + LS+ +LVG IP N         +++D N+L        
Sbjct: 132 SNSLHGAIPVSLTNSSSLSYLDLSTNLLVGAIPANISLLSNLEYLDLDQNNLTGTVLQTI 191

Query: 463 VMVTLLDVLAAFGDLTP*SYTVPRKMLLVPTLLEPSLTMSSIDSG 597
             +T L++L  F +    S ++P K+  +P L++  L  +++  G
Sbjct: 192 GDITSLEILYLFQNQL--SGSIPDKIWQLPNLMQLVLGENNLSGG 234


>07_01_0307 - 2194796-2199274
          Length = 1492

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -3

Query: 296 EVRELRKSNCTLVYTKNEAAQQVLL 222
           E+RELR  N   V+TK EAA+  LL
Sbjct: 798 ELRELRIDNLEKVHTKEEAAEAKLL 822


>07_01_0159 - 1116786-1117153,1117251-1119936
          Length = 1017

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 289 RTSRSDSGPVLGSIKHTIMLSTSNRNMPLSSTVLVGVIPLNTINM-DLNSLI 441
           RT       ++G I   I L ++ RNM L S  L G+IP    N+  LN++I
Sbjct: 154 RTLDVSRNHLVGDITPNIALLSNLRNMRLHSNNLTGIIPPEIGNITSLNTVI 205


>02_04_0123 +
           19961904-19962096,19962836-19963029,19963334-19963465,
           19963921-19964038,19964248-19964484,19964576-19964658,
           19964777-19965004,19965394-19965470,19965590-19965626,
           19965786-19965952,19966156-19966234,19966301-19966378,
           19967459-19967575,19967999-19968379,19968453-19968590,
           19968680-19968769,19968832-19968840
          Length = 785

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/59 (37%), Positives = 29/59 (49%)
 Frame = +3

Query: 231 LLSCLVFRVHQSAVGFAQFAHLSFGQRPRVGVDQAHNHAVDFESQHAIVLYSFSGRYTF 407
           +L  L+ R   SA+  AQ     F   P V  DQA N+AVD   Q A+   +F G + F
Sbjct: 55  ILPPLLSRGSDSALFVAQLIRFIFRTLP-VYDDQASNNAVDDLVQLALRKPTFLGHFAF 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,578,167
Number of Sequences: 37544
Number of extensions: 363316
Number of successful extensions: 930
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)