Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13b10
         (708 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   4.1  
AY117994-1|AAM66793.1|  120|Anopheles gambiae glucose-6-phosphat...    24   5.4  
U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.             23   7.1  
AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    23   7.1  

>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 63   VFEKQMTSFLKFSFEKQMTSSLDCVLHVEFYS 158
            +++KQ    L+FS  K+   +LD V+H  + S
Sbjct: 1940 LYDKQ--GILRFSLHKEHNETLDRVIHFTYVS 1969


>AY117994-1|AAM66793.1|  120|Anopheles gambiae glucose-6-phosphate
           dehydrogenase protein.
          Length = 120

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 514 FYCLSSCNFKQDAKLALQTLTNFE 443
           FY   SC+ ++D +L  Q ++ FE
Sbjct: 41  FYVAGSCDSRRDFELLNQEISKFE 64


>U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.
          Length = 278

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 63  VFEKQMTSFLKFSFEKQMT 119
           V+EK +   L  SFEK++T
Sbjct: 193 VYEKDLCRLLPLSFEKEVT 211


>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal
           ion/proton exchanger 3 protein.
          Length = 1221

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = +3

Query: 618 KSHHSQSACV*QSRQRNIYRFP---KNSDIRQF 707
           K HH +S  V   +Q+N   FP   +N   +QF
Sbjct: 845 KKHHKRSKRVKDGKQQNHVSFPEFVQNGSAKQF 877


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 717,095
Number of Sequences: 2352
Number of extensions: 13107
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 72340815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)