Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13b10
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z68296-3|CAB54197.2|  223|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z81119-6|CAB03337.2|  401|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z83236-9|CAN86907.1|  140|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
           protein R11A8.7b protein.
          Length = 2584

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = -3

Query: 550 SDMGVVMLVEEYFYCLSSCNFKQDAKLALQTLT---NFESLSDLM---ASYNFSTPDLDT 389
           +D G +++VEE     +  NF+QD + AL       +FE +  L+   AS NF +   D 
Sbjct: 563 ADFGSLLIVEEVIRAGADLNFEQDERTALMKAAKGDHFEVVQLLLSKGASVNFKSSKNDA 622

Query: 388 NAYELMDFE*N 356
            A  L   E N
Sbjct: 623 TALSLACSEGN 633


>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
           protein R11A8.7a protein.
          Length = 2606

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = -3

Query: 550 SDMGVVMLVEEYFYCLSSCNFKQDAKLALQTLT---NFESLSDLM---ASYNFSTPDLDT 389
           +D G +++VEE     +  NF+QD + AL       +FE +  L+   AS NF +   D 
Sbjct: 563 ADFGSLLIVEEVIRAGADLNFEQDERTALMKAAKGDHFEVVQLLLSKGASVNFKSSKNDA 622

Query: 388 NAYELMDFE*N 356
            A  L   E N
Sbjct: 623 TALSLACSEGN 633


>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical
           protein R11A8.7b protein.
          Length = 2584

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = -3

Query: 550 SDMGVVMLVEEYFYCLSSCNFKQDAKLALQTLT---NFESLSDLM---ASYNFSTPDLDT 389
           +D G +++VEE     +  NF+QD + AL       +FE +  L+   AS NF +   D 
Sbjct: 563 ADFGSLLIVEEVIRAGADLNFEQDERTALMKAAKGDHFEVVQLLLSKGASVNFKSSKNDA 622

Query: 388 NAYELMDFE*N 356
            A  L   E N
Sbjct: 623 TALSLACSEGN 633


>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical
           protein R11A8.7a protein.
          Length = 2606

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = -3

Query: 550 SDMGVVMLVEEYFYCLSSCNFKQDAKLALQTLT---NFESLSDLM---ASYNFSTPDLDT 389
           +D G +++VEE     +  NF+QD + AL       +FE +  L+   AS NF +   D 
Sbjct: 563 ADFGSLLIVEEVIRAGADLNFEQDERTALMKAAKGDHFEVVQLLLSKGASVNFKSSKNDA 622

Query: 388 NAYELMDFE*N 356
            A  L   E N
Sbjct: 623 TALSLACSEGN 633


>Z68296-3|CAB54197.2|  223|Caenorhabditis elegans Hypothetical
           protein C46C2.5 protein.
          Length = 223

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +1

Query: 631 ANRRACNKVDSETFI--VFQKIQIFDSF 708
           A + AC+K+D  +FI  VF  + +FD+F
Sbjct: 167 AGKLACSKIDKNSFIGAVFAGVDLFDTF 194


>Z81119-6|CAB03337.2|  401|Caenorhabditis elegans Hypothetical
           protein T10H4.8 protein.
          Length = 401

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = -3

Query: 634 WLWCDFHRN--HAYRGTRDIACNNYVEHLNSDMGVVML 527
           W  C F       YR   D +C NY EHLN    V+++
Sbjct: 176 WHSCQFFAMTLRRYRDVLDKSCYNYEEHLNHTNSVLVV 213


>Z83236-9|CAN86907.1|  140|Caenorhabditis elegans Hypothetical
           protein K10H10.12 protein.
          Length = 140

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +1

Query: 568 SCCMLCRVCPDTRGFGENHTTANRRACNKVDSETFIVFQKIQIFDSF 708
           SC     +C    G    HT  N+  CN+  + + I    + +F +F
Sbjct: 87  SCHQAQSICEQVGGVSGCHTCNNKHMCNRFSNFSIIFVIFLTLFSAF 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,779,556
Number of Sequences: 27780
Number of extensions: 318354
Number of successful extensions: 661
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)