Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13b07
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   186   4e-48
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   185   5e-48
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.3  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    28   1.3  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    28   1.3  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    28   1.7  
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual      27   4.0  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   4.0  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    25   9.2  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  186 bits (452), Expect = 4e-48
 Identities = 93/185 (50%), Positives = 128/185 (69%), Gaps = 2/185 (1%)
 Frame = -3

Query: 778 RRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXX 599
           + +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGVE   
Sbjct: 172 KEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVN 231

Query: 598 XXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTR 419
                   LAPGGHLGRFVIWT+SAFG LD +FGS    ++ KKN+ LP+  ++N D+TR
Sbjct: 232 VRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIISNADVTR 291

Query: 418 LLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNL 245
           L+ SDEI+ +++A    RV RA  +K NPL N   + +LNPYA     KA ++L   K  
Sbjct: 292 LINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAY--KANVKLNTGKTP 349

Query: 244 KALAD 230
           KA  +
Sbjct: 350 KAAGE 354


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  185 bits (451), Expect = 5e-48
 Identities = 92/185 (49%), Positives = 128/185 (69%), Gaps = 2/185 (1%)
 Frame = -3

Query: 778 RRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXX 599
           + +KA+ D++KV  S++LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGVE   
Sbjct: 172 KEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVN 231

Query: 598 XXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANTDLTR 419
                   LAPGGHLGRFVIWT+SAFG LD +FGS    ++ KKN+ LP+  ++N D+TR
Sbjct: 232 VRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIISNADVTR 291

Query: 418 LLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNL 245
           L+ SDEI+ +++A    RV RA  +K NPL N   + +LNPYA     KA +++   K  
Sbjct: 292 LINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYAKAY--KANVKINSEKTP 349

Query: 244 KALAD 230
           KA  +
Sbjct: 350 KAAGE 354


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 27/109 (24%), Positives = 46/109 (42%)
 Frame = -3

Query: 478  KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 299
            KQK + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P 
Sbjct: 730  KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSPT 787

Query: 298  AAVLKRKAILELRRRKNLKALADAEKSGLKLSKRNPAMKAEKLRERRRK 152
              +  ++   +      +  L   ++    L+KRN   K +      RK
Sbjct: 788  PQITVKQNTTKSSSAPRMGMLEQLKQE--YLTKRNFESKLKSSAVSSRK 834


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = +2

Query: 296 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLWLGQ 457
           +V +EF+ RL IG+RV+       AF+GS E +  L+ + +T + ++  L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
 Frame = -3

Query: 412 KSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVLKRKAILELRRRKNLKA-- 239
           +S  +  +    +K+ IR  R+L+P    ++  + N Y+ + +  ++   R R       
Sbjct: 659 RSRSVTPINNINHKKYIRKDRELSPRGRERSSNR-NSYSDLSRSSSLSRGRSRSYTPEGR 717

Query: 238 LADAEKSGLKLSKRNPAMKAEKLRERRRKN 149
           L ++E  G +    +PA +  + R+R R++
Sbjct: 718 LIESEDKGYRSRSSSPASRKYRSRQRYRRS 747


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 555 LDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSH 421
           +D+ S+ LS H+   T +S   R H      ST PSQ + +  SH
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASH 342


>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 656

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 4/90 (4%)
 Frame = +2

Query: 515 PAECGLSPDDETSKMTSRSQLQEVQLVNIQELHTGDVAEG----ASQTLILVEDYEGPLT 682
           P E   SP    S  TS  Q   + +   Q+L    V++      S T ++ + YE PLT
Sbjct: 93  PRELQTSPI--VSPTTSPKQTPSINVTEPQDLELDKVSQDHEKDQSNTYLMEDGYEFPLT 150

Query: 683 LDTTTVAHFTLTSTKTLRLVHLKDIRPCLE 772
            D    +      T      HL+    CLE
Sbjct: 151 RDLIRRSKSDADQTPPTGFKHLRH-SSCLE 179


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 549 VSSSGLSPHSAGLTPYSGHGRHHRNK 472
           VS S    HS    P+S  GRH+R K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
 Frame = -3

Query: 430 DLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAM-LKLNPYAAVLKRKAILELRRR 254
           ++T  LK DE+RK+    N +       L  + +++   + L+    + K +  +EL   
Sbjct: 366 EVTETLKGDELRKISLQVNVKFSEEEVTLEDVDDDEIEDILLDKDEILTKTQVWMEL--- 422

Query: 253 KNLKALADAEKSGLKLSKRNPAMKAEKLRERRR 155
            N   LA+ E   LKL +        + R+RRR
Sbjct: 423 -NKDYLAEEEAKNLKLQEDLKKGIVRQPRKRRR 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,132
Number of Sequences: 5004
Number of extensions: 48022
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)