Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13b06
(349 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
X91618-1|CAA62821.1| 524|Tribolium castaneum hunchback protein. 29 0.018
AM292355-1|CAL23167.1| 324|Tribolium castaneum gustatory recept... 26 0.13
DQ855496-1|ABH88183.1| 129|Tribolium castaneum chemosensory pro... 23 1.2
DQ855498-1|ABH88185.1| 127|Tribolium castaneum chemosensory pro... 22 2.1
AJ973445-1|CAJ01492.1| 127|Tribolium castaneum hypothetical pro... 22 2.1
AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory recept... 21 2.7
AM292348-1|CAL23160.2| 346|Tribolium castaneum gustatory recept... 21 2.7
U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic pr... 20 6.3
DQ855497-1|ABH88184.1| 127|Tribolium castaneum chemosensory pro... 20 8.3
AY043293-1|AAK96033.1| 523|Tribolium castaneum homeodomain tran... 20 8.3
AF187068-1|AAF03888.1| 477|Tribolium castaneum proboscipedia or... 20 8.3
>X91618-1|CAA62821.1| 524|Tribolium castaneum hunchback protein.
Length = 524
Score = 28.7 bits (61), Expect = 0.018
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -1
Query: 157 CPKCYFVTSSEVSVAEYIEMHKNFNTKFADRCPNDFIVINSKSWNNH 17
CPKC F+T + + ++ H ++C D+ +N N+H
Sbjct: 233 CPKCPFITEYKHHLEYHLRNHAGSKPFQCNKC--DYTCVNKSMLNSH 277
>AM292355-1|CAL23167.1| 324|Tribolium castaneum gustatory receptor
candidate 34 protein.
Length = 324
Score = 25.8 bits (54), Expect = 0.13
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 149 VLFCDVVRSERG*IHRNA*KF*HK 78
++ CD VRSE + +NA K HK
Sbjct: 254 IIMCDCVRSEASKVVKNAQKLRHK 277
>DQ855496-1|ABH88183.1| 129|Tribolium castaneum chemosensory
protein 10 protein.
Length = 129
Score = 22.6 bits (46), Expect = 1.2
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Frame = -3
Query: 302 TTYDVVGKRDYNKFDKLVKKY*HVAINHTTF----QEYKQSQQKAFRSLCS 162
T YD + + K D+L+K Y + + T +E K++ A S CS
Sbjct: 26 TKYDNIDLEEILKSDRLLKNYFNCLMERGTCSPDGEELKKALPDALHSGCS 76
>DQ855498-1|ABH88185.1| 127|Tribolium castaneum chemosensory
protein 12 protein.
Length = 127
Score = 21.8 bits (44), Expect = 2.1
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = -3
Query: 302 TTYDVVGKRDYNKFDKLVKKY*HVAINH----TTFQEYKQSQQKAFRSLCSVMSK 150
T YD + K D+L+K Y + ++ QE K + A ++ CS S+
Sbjct: 24 TKYDNIDLNQILKSDRLLKNYVNCLLDRGKCSPDGQELKNNLADALQTSCSKCSQ 78
>AJ973445-1|CAJ01492.1| 127|Tribolium castaneum hypothetical
protein protein.
Length = 127
Score = 21.8 bits (44), Expect = 2.1
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = -3
Query: 302 TTYDVVGKRDYNKFDKLVKKY*HVAINH----TTFQEYKQSQQKAFRSLCSVMSK 150
T YD + K D+L+K Y + ++ QE K + A ++ CS S+
Sbjct: 24 TKYDNIDLNQILKSDRLLKNYVNCLLDRGKCSPDGQELKNNLADALQTSCSKCSQ 78
>AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory receptor
candidate 40 protein.
Length = 373
Score = 21.4 bits (43), Expect = 2.7
Identities = 8/35 (22%), Positives = 22/35 (62%)
Frame = -3
Query: 257 KLVKKY*HVAINHTTFQEYKQSQQKAFRSLCSVMS 153
+L++K+ V + ++ K ++K + ++C++MS
Sbjct: 287 QLIEKWSRVEMALDNWKNDKSLKRKFYLTICTIMS 321
>AM292348-1|CAL23160.2| 346|Tribolium castaneum gustatory receptor
candidate 27 protein.
Length = 346
Score = 21.4 bits (43), Expect = 2.7
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +3
Query: 93 LCISMYSATLTSD 131
LC++MY +LT D
Sbjct: 264 LCLTMYKLSLTED 276
Score = 20.2 bits (40), Expect = 6.3
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +3
Query: 78 FVLKFLCISMYSATLTSD 131
F+L F CIS+ +++D
Sbjct: 169 FILAFACISIAYTNVSTD 186
>U63132-1|AAB38392.1| 372|Tribolium castaneum decapentaplegic
protein protein.
Length = 372
Score = 20.2 bits (40), Expect = 6.3
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = -1
Query: 253 W*KNIDMLRSIIRRFKST 200
W K++ + + I+ FKST
Sbjct: 15 WGKSLSIPQQILNEFKST 32
>DQ855497-1|ABH88184.1| 127|Tribolium castaneum chemosensory
protein 11 protein.
Length = 127
Score = 19.8 bits (39), Expect = 8.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 302 TTYDVVGKRDYNKFDKLVKKY 240
T YD V + K D+L+K Y
Sbjct: 26 TKYDNVDLDEIIKSDRLLKNY 46
>AY043293-1|AAK96033.1| 523|Tribolium castaneum homeodomain
transcription factor Maxillopediaprotein.
Length = 523
Score = 19.8 bits (39), Expect = 8.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 281 CRPRRT*CAGPLYLLQKFCNIHF 349
CRPRR A L L ++ + F
Sbjct: 30 CRPRRIEIAASLDLTERQVKVWF 52
>AF187068-1|AAF03888.1| 477|Tribolium castaneum proboscipedia
ortholog protein.
Length = 477
Score = 19.8 bits (39), Expect = 8.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 281 CRPRRT*CAGPLYLLQKFCNIHF 349
CRPRR A L L ++ + F
Sbjct: 161 CRPRRIEIAASLDLTERQVKVWF 183
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,652
Number of Sequences: 336
Number of extensions: 1686
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used: 6876025
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
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