Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13b06
         (349 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   1.4  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    24   1.4  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    24   1.4  
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    22   5.7  
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    22   7.5  
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          21   9.9  

>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 249 EKILTCCDQSY-DVSRVQTISAKSL 178
           EK  TCCD+ Y D++   T+  K+L
Sbjct: 220 EKFYTCCDEPYLDITFNITMRRKTL 244


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 249 EKILTCCDQSY-DVSRVQTISAKSL 178
           EK  TCCD+ Y D++   T+  K+L
Sbjct: 220 EKFYTCCDEPYLDITFNITMRRKTL 244


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 249 EKILTCCDQSY-DVSRVQTISAKSL 178
           EK  TCCD+ Y D++   T+  K+L
Sbjct: 216 EKFYTCCDEPYLDITFNITMRRKTL 240


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
            channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 109  IQPRSLRTTSQNNTLDITLHNDRKAFC 189
            +QP  L ++ QNN L   L N   + C
Sbjct: 1128 LQPERLNSSGQNNPLKGKLTNCHSSGC 1154


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/41 (21%), Positives = 16/41 (39%)
 Frame = -1

Query: 157 CPKCYFVTSSEVSVAEYIEMHKNFNTKFADRCPNDFIVINS 35
           CP C + +  +  +  ++ +H        D C   F   NS
Sbjct: 242 CPHCTYASPDKFKLTRHMRIHTGEKPYSCDVCFARFTQSNS 282


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = +2

Query: 2   GRTIFMIIPTFRINYNKIVRAPIGEFCVKIFMHFYVFSHAHFGRRHKITLWT*HY 166
           G  +FM +     N  KI    + E+  +++    +FS A    ++ I   T  Y
Sbjct: 411 GEEVFMFVEKVCKNNIKIRFYELDEYDQEVWQEMAIFSEADVHHQYAIAFKTPPY 465


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 352,380
Number of Sequences: 2352
Number of extensions: 6898
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 24935070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)