Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13b06
         (349 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127482-1|BAC86999.1| 1085|Homo sapiens protein ( Homo sapiens ...    29   3.0  
U45285-1|AAA97878.1|  829|Homo sapiens specific 116-kDa vacuolar...    29   4.0  
BC032465-1|AAH32465.1|  830|Homo sapiens T-cell, immune regulato...    29   4.0  
BC018133-1|AAH18133.1|  830|Homo sapiens T-cell, immune regulato...    29   4.0  
AF033033-1|AAD31081.2|  614|Homo sapiens TIRC7 protein protein.        29   4.0  
AF025374-1|AAC35742.1|  614|Homo sapiens TIRC7 protein.                29   4.0  
AB007859-1|BAA23695.4| 2982|Homo sapiens KIAA0399 protein protein.     29   4.0  
AB036429-1|BAB18535.1|  872|Homo sapiens N-deacetylase/N-sulfotr...    28   7.0  
BX538342-1|CAD98105.1| 1122|Homo sapiens hypothetical protein pr...    28   9.3  
BC036884-1|AAH36884.1|  884|Homo sapiens ZNF462 protein protein.       28   9.3  
AL512593-2|CAI14942.1|  931|Homo sapiens zinc finger protein 462...    28   9.3  
AL512593-1|CAI14941.1| 1411|Homo sapiens zinc finger protein 462...    28   9.3  
AB058706-1|BAB47432.2| 1412|Homo sapiens KIAA1803 protein protein.     28   9.3  

>AK127482-1|BAC86999.1| 1085|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45574 fis, clone BRTHA3011187. ).
          Length = 1085

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 227 INHTTFQEYKQSQQKAFRSLCSVMS 153
           + + T QE+KQS Q  FRSLC+  S
Sbjct: 882 MKNVTEQEHKQSLQLTFRSLCTYFS 906


>U45285-1|AAA97878.1|  829|Homo sapiens specific 116-kDa vacuolar
           proton pump subunit protein.
          Length = 829

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 107 VFSHAHFGRRHKITLWT 157
           VF+H HFG+RH++ L T
Sbjct: 554 VFNHVHFGQRHRLLLET 570


>BC032465-1|AAH32465.1|  830|Homo sapiens T-cell, immune regulator
           1, ATPase, H+ transporting, lysosomal V0 subunit A3
           protein.
          Length = 830

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 107 VFSHAHFGRRHKITLWT 157
           VF+H HFG+RH++ L T
Sbjct: 554 VFNHVHFGQRHRLLLET 570


>BC018133-1|AAH18133.1|  830|Homo sapiens T-cell, immune regulator
           1, ATPase, H+ transporting, lysosomal V0 subunit A3
           protein.
          Length = 830

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 107 VFSHAHFGRRHKITLWT 157
           VF+H HFG+RH++ L T
Sbjct: 554 VFNHVHFGQRHRLLLET 570


>AF033033-1|AAD31081.2|  614|Homo sapiens TIRC7 protein protein.
          Length = 614

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 107 VFSHAHFGRRHKITLWT 157
           VF+H HFG+RH++ L T
Sbjct: 338 VFNHVHFGQRHRLLLET 354


>AF025374-1|AAC35742.1|  614|Homo sapiens TIRC7 protein.
          Length = 614

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 107 VFSHAHFGRRHKITLWT 157
           VF+H HFG+RH++ L T
Sbjct: 338 VFNHVHFGQRHRLLLET 354


>AB007859-1|BAA23695.4| 2982|Homo sapiens KIAA0399 protein protein.
          Length = 2982

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 221 HTTFQEYKQSQQKAFRSLCSVMS 153
           + T QE+KQS Q  FRSLC+  S
Sbjct: 904 NVTEQEHKQSLQLTFRSLCTYFS 926


>AB036429-1|BAB18535.1|  872|Homo sapiens
           N-deacetylase/N-sulfotransferase 4 protein.
          Length = 872

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 224 NHTTFQEYKQSQQKAFRSLCSVMSKVLFCDVVR 126
           NH+T+Q    ++ +  +SL S+ SK LF  V++
Sbjct: 226 NHSTYQPVLLTELQTEKSLSSLSSKTLFATVIQ 258


>BX538342-1|CAD98105.1| 1122|Homo sapiens hypothetical protein
           protein.
          Length = 1122

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -3

Query: 344 EYYKTFEANKVGQHTTYDVVGKRDYNKFDKLVKKY*HVAINHTTFQE 204
           EY+K  + N VG  T      + +Y+K  K+ KKY H+ +  T F++
Sbjct: 623 EYFKN-KTNVVGLLTNSAEKFQINYDKHIKVNKKYNHIPMTLTVFEK 668


>BC036884-1|AAH36884.1|  884|Homo sapiens ZNF462 protein protein.
          Length = 884

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 166 VVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRC 62
           V  C KC F  SS+ S+ ++IE H          C
Sbjct: 677 VFRCDKCTFTCSSDESLQQHIEKHNELKPYKCQLC 711


>AL512593-2|CAI14942.1|  931|Homo sapiens zinc finger protein 462
           protein.
          Length = 931

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 166 VVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRC 62
           V  C KC F  SS+ S+ ++IE H          C
Sbjct: 724 VFRCDKCTFTCSSDESLQQHIEKHNELKPYKCQLC 758


>AL512593-1|CAI14941.1| 1411|Homo sapiens zinc finger protein 462
            protein.
          Length = 1411

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 166  VVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRC 62
            V  C KC F  SS+ S+ ++IE H          C
Sbjct: 1204 VFRCDKCTFTCSSDESLQQHIEKHNELKPYKCQLC 1238


>AB058706-1|BAB47432.2| 1412|Homo sapiens KIAA1803 protein protein.
          Length = 1412

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 166  VVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADRC 62
            V  C KC F  SS+ S+ ++IE H          C
Sbjct: 1205 VFRCDKCTFTCSSDESLQQHIEKHNELKPYKCQLC 1239


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,648,672
Number of Sequences: 237096
Number of extensions: 791199
Number of successful extensions: 5577
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5577
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)