Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13b06
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.45 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   0.45 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   0.45 
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   4.2  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   4.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   5.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.5  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    20   7.3  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 0.45
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 249 EKILTCCDQSY-DVSRVQTISAKSL 178
           EK  TCCD+ Y D++   T+  K+L
Sbjct: 221 EKFYTCCDEPYLDITFNITMRRKTL 245


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.2 bits (50), Expect = 0.45
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 249 EKILTCCDQSY-DVSRVQTISAKSL 178
           EK  TCCD+ Y D++   T+  K+L
Sbjct: 221 EKFYTCCDEPYLDITFNITMRRKTL 245


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 0.45
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -2

Query: 249 EKILTCCDQSY-DVSRVQTISAKSL 178
           EK  TCCD+ Y D++   T+  K+L
Sbjct: 217 EKFYTCCDEPYLDITFNITMRRKTL 241


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 7/36 (19%), Positives = 18/36 (50%)
 Frame = -3

Query: 278 RDYNKFDKLVKKY*HVAINHTTFQEYKQSQQKAFRS 171
           R Y K     +K+     +H  +   ++ +QK++++
Sbjct: 250 RQYEKLHNEKEKFLEERTSHKRYSRSREREQKSYKN 285


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 320 NKVGQHTTYDVVGKRDY 270
           NKV  H  YD++ K D+
Sbjct: 237 NKVIIHPKYDIIEKDDW 253


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +1

Query: 100 FLCIQPRSLRTTSQNNTLDITLHNDRKAFC 189
           ++ +  +SLRT S    +++ + N    FC
Sbjct: 75  YIFLSTKSLRTPSNLFVINLAISNFLMMFC 104


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 232 TCQYFFTNLSNLL*SRLPTTSYVVCWPTL 318
           TC +    ++ +L     T +Y  C PTL
Sbjct: 189 TCDFTRDKVAPILVRARETPNYTACPPTL 217


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 6/39 (15%), Positives = 16/39 (41%)
 Frame = -1

Query: 157 CPKCYFVTSSEVSVAEYIEMHKNFNTKFADRCPNDFIVI 41
           CP+C+   + +  +  ++ +H          C   F+ +
Sbjct: 12  CPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQV 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,154
Number of Sequences: 438
Number of extensions: 1884
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)